FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003643441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAAAATCGGCTTTATCGGCACCGGCATCATGGGCCAACCCATGGCCG33.75No Hit
CAGTACTCAGTGCAGGGGAGGGCAAGTGACCCAGTTGTTGATTTGCTGCT33.75No Hit
ATGTCGGACCTCTCGCGCCATGACACCGATCCGGTCTGGCGGCTGGCGGG33.75No Hit
CTTTGCCACTCCTCATCAAAAGCATGAGCATCGCTTTCATTCATATTGAT22.5No Hit
ACTGGTGTCTCCTGCGCCTGCACCGGCTCCTGCAAGTGCAAAGAGTGCAA22.5No Hit
GCTCTCTCTTTGCCTGCTGCCATCCATGTAAGACAGGACTTGCTCCTGCT22.5No Hit
GGCAAGGAGTTGGTGCACACCTACAAGGGCTGCATCAGGTCCCAGGACTG22.5No Hit
ACATGGTGAGGGGGCTGAGCAGGCTGGCTCAGGTGTCTCTTCCTCTTCTG22.5No Hit
GTTGATAAATCATGTTGATTGTAGGTACCCTTGATACAGTGTGATGAGAA22.5No Hit
GGCTTCATATGTGGGGACAAACCCGAGTCATTCACTTCTTGCTGGAGAGT22.5No Hit
CTATAAATTAGCTTTGGGAGCCGGTTCAAATCATACGAGATACTGGCGGC22.5No Hit
GTTTTTAAGTTTTCAAAGCCTGCAGAGCACTAATTTCTGGAGCCTCCTCT22.5No Hit
ACATATGTATACATGTGCCATGTTGGTTTGCTGCACCCATCAACTCGTCA11.25No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.25No Hit
GTGCAGGAATAGGCTACATTCTGCCAACCCCAGAATTAGAGCCAGGCCTT11.25No Hit
ACCCCACACTGCCTGGAGTCCTGGATTCTTCCACGTCTGATGAGTGACCT11.25No Hit
TCTCTTAAAAAAATACAGTGGTGCCACCAGGTTTTAACACTTCTCTGGGT11.25No Hit
CCATTGCACTCCAGCCTGGGTGACAGAGGGAGACTCTGTCTCAAAACAAA11.25No Hit
CTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAG11.25No Hit
GGCGCTACTGAAAGCTTTATAACAAGGAATTATGTTTCAGACAAGACTCT11.25No Hit
CCTTCGCGCCGCGCCCGATCACGCCGGCGATCGACTTCTCCGAATTCCCG11.25No Hit
TATTTGGTTTTTGAGCCTGTCACTCTAAACCAGCGTTTAACGTTCAAAAG11.25No Hit
CCCGTGGATTGGCAAGTTATTGTATCTTGAGGACTTCTTCGTGATGAGTG11.25No Hit
GGGTTATGCTTTTTCTTAAAGGAATGTTGTTGCTGGTTTGATATTCTTTC11.25No Hit
CATATATAGGGATTTATATTACAATAAGAAAAATCAGATCCTAAATTTGG11.25No Hit
GGCGGACACTGCCTCCCGGGTGACGACGGTCATCGACGATCTCCTTCCAG11.25No Hit
ATGCCATGCTCAATGGGGTACTTCAGGGTCAGGATGCCACGCTTGCTCTG11.25No Hit
GACTAATAAAGAAGAAAAGAGAGAAGAATCAAATAGATGCAAAAAAAAAA11.25No Hit
TTGTAATCCTCAAGGGATAGGGTTATTAATACATAGTAATTTTATACAGA11.25No Hit
AGTTTGGCTTCCCTCTCTTCCACCAGTGTGTGTATGTTCTCCCAAATGAA11.25No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC11.25No Hit
GCTGTATGCACAGCTCTTAAGCTAGCATGTGGTGTGCTGTGGAAGCTCGG11.25No Hit
GAATTCTGGCCATCACTGATATTTCTACTGCCTTTACAGTTTTGCCTTTT11.25No Hit
ATTTCACTCCATTCGTTCCCATTCCATTCAATTCCATTCCATTCAATTCC11.25No Hit
GAGTATATCTTCCATCAGTGTAAAGAAAATGAAGATTACAATGACGTCCT11.25No Hit
CCATAGTGCTCGTACGCTAGTCTAGCCTAGTAAAACCACGATCAGCCGAC11.25No Hit
GGCTTGAAGCACCTGGGACTGCAGCCTCTCGGTCCGGTCTCCAGTCCCCA11.25No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC11.25No Hit
CCAATATACAGAGCGTCAAAATCAATATGGAATATGTGAAGAGCCAAAAA11.25No Hit
GTCCTGGCATTTGTGGCCTCTCACTTTGTAGGAAACTCATCTCCTTCCTG11.25No Hit
CCTTCCCCTGCTCCAGAAAAGAAGGAAAAAACTCCAGAGCTCCCAGAACC11.25No Hit
CCACATCCACGAGAAGGGCGACTGCGGCGACAACGGCAATGCCTCGGGCG11.25No Hit
AGCATCACGCGATCGCCGGGGGCGAAGCGCTGCTCGTCGGATTGAACGAC11.25No Hit
CCTGGGAGCCTGTCATCATTTGAAAGTAACAGAAGAAAGCTGTCAGGCTG11.25No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA11.25No Hit
GACCTCAAGCGATCCACACACCTCGGCCTTCCAAAGTGCTGGGATTACAG11.25No Hit
TGTCCATCCAGCTGCCCAAGCGTGAACATCGTTACTTCTCCACTAAGGGG11.25No Hit
GTGAAGGAGAAGCAGACGAAGGTGGAAGGAGAGCTGGAGGAGATGGAGCG11.25No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATT11.25No Hit
CCAGAAGACGCTGCTGGACACAGAGGACAAGCTGAAGGGCGCACGGGAGG11.25No Hit
GTATCAACGCAGAGTACATGGGAATGATACGGCGACCACCGCTGTCTCTT11.25No Hit
GAGCTGTTCCCACATCAGGCACAGCAGCTGCAGTTCTCCAACGTCCCTTT11.25No Hit
GCATTCTTCAAACTTTGTTTTGAATTTCTGTGCATTCTCAGCATTCAGGA11.25No Hit
GTCCATTATAGCTGTGTGACCTTGGGCAAGTCACATCACCTGCCTGAGCC11.25No Hit
CGCATCCGCCATGCGGCCGCACGCCATGCCTCATCGCCTTGCGCCGTCTC11.25No Hit
CCGGTGTACAGTAATGGGCTTCAATGCTGGGATTACTTTTTAGGGTTCAG11.25No Hit
CGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATGGCAGCAGTA11.25No Hit
TGCCGGTACATCGGGGATTTCTGGCTCTTTCCTCTTCGCCTTAAATTCGG11.25No Hit
GTCTATACTTGGAAGTTTTTACTTGGCTTAATAGGTGACTTTTGGCAGCT11.25No Hit
TTAGTAGAGACGGCGTTTCGCCATGTTCGTTAGGCTGGTGCAGTGGCTTA11.25No Hit
CCCTTGTTCCGTTCGGCCCGTGAGGAGAACGGAACTGGCGGCCAAGGGGA11.25No Hit
CCCCCGATGATCCCAGCATGCGATAATGCCAGGCAGTGGTCCCTGGGCAT11.25No Hit
CCTGACATGAGGGAGTGTTACCGCGTCTTGCGGCGATCGGCCGGCCGAAA11.25No Hit
CTCCCGCCCCGGCCGCGCGTTACCGGCAGTCTGCTGTCCCGGCGGCCGGC11.25No Hit
GGTGGGGGTGACGGAAGGGAGCTAATGCTCCAAGTCCACTTCAGCCGGAG11.25No Hit

[FAIL]Adapter Content

Adapter graph