FastQCFastQC Report
Tue 10 May 2022
EGAF00003643549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21997
Sequences flagged as poor quality0
Sequence length140
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA610.2773105423466836No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT530.24094194662908577No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG490.22275764877028686No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG340.15456653179979088No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC340.15456653179979088No Hit
TCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGC310.1409283084056917No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC290.1318361594762922No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT290.1318361594762922No Hit
TCCTTCACGTGCGCGACCAGGAAAGCACTCGCTAGCGGAGTGTCGGCTTC270.12274401054689277No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA270.12274401054689277No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG260.11819793608219302No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA260.11819793608219302No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC250.11365186161749329No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT240.10910578715279357No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA230.10455971268809383No Hit
GTGCTGAGCAGCAAGCCCCTTGCGGCGCGCACCGCGGCATGGCCATCGGT230.10455971268809383No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT230.10455971268809383No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA220.10001363822339408No Hit
ACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCG220.10001363822339408No Hit
GTCTGGCTCTGGCGTTCATGCAGGTCGCGCGCGGCCGCCAGTCGTGCAAC220.10001363822339408No Hit
GTCCAGCACCAGGTGGTTGCCGCGCGATCCGCCTGCTGCGCCCGCGTTCA220.10001363822339408No Hit
GCATATGCACGCACGCGCGTCGAAGAGCAACTGAGCGGCGGCAGCGTTGC220.10001363822339408No Hit
GTCTCAGGGGATCTGCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGC220.10001363822339408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)