FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003643690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3283
Sequences flagged as poor quality0
Sequence length140
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190.5787389582698751No Hit
GTACATGGGATTACCGCTGCGACAGCGGCCGGATCGGCATCCGCCACAAC180.5482790130977765No Hit
GACCACCACTGCGCGATTCGCCGCATCGAGCGAAGCGGTCGGCTCGTCCA160.48735912275357907No Hit
GTACATGGGTTGACCTCAAATCAGGTAGGACTACCCGCTGAACTTAAGCA160.48735912275357907No Hit
GCAATAACACAGGGGCATACAGTAACCAGGCAAGAGTTCAATCGCTTAGT150.45689917758148035No Hit
GTTGTTGACCTTGCGACCGCCGAGCCGCGTCAGGTGCTGAGCATCCGCCG130.39597928723728293No Hit
TAATACTTCAGATCAGTTAAGTAGGGCCATATGCCTCGGGAATAAGCTGA120.36551934206518427No Hit
GTATCAACGCAGAGTACATGGGATTACCGCTGCGACAGCGGCCGGATCGG110.3350593968930856No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA110.3350593968930856No Hit
CACTTATCCTGGGCTTCATCCAATGGTGGGTGCTAACTCTTTAATAGCCT110.3350593968930856No Hit
GTGCTGAGCATCCGCCGCTCGACGATCGGCTATGTCAGCCAGTTCCTGCG110.3350593968930856No Hit
GGGGCATACAGTAACCAGGCAAGAGTTCAATCGCTTAGTTTCGTGGCGGG110.3350593968930856No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC110.3350593968930856No Hit
CTCTTTAATAGCCTTCAGTGACTGTGAGATGCCGTCTACGAGTGGCACGA100.3045994517209869No Hit
GTTAAGTAGGGCCATATGCCTCGGGAATAAGCTGACGGTGACAAGGTTTC100.3045994517209869No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA100.3045994517209869No Hit
CCACTGCGCGATTCGCCGCATCGAGCGAAGCGGTCGGCTCGTCCAGCAGC100.3045994517209869No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT100.3045994517209869No Hit
TACAGTAACCAGGCAAGAGTTCAATCGCTTAGTTTCGTGGCGGGATTTGA100.3045994517209869No Hit
ATCCAATGGTGGGTGCTAACTCTTTAATAGCCTTCAGTGACTGTGAGATG100.3045994517209869No Hit
GTTAAGAGCCTCCGCCCGTCTCTGGGACTATGGACGGGCACGCTCATATC90.27413950654888825No Hit
CGGCTATGTCAGCCAGTTCCTGCGCGCGGTGCCGCGGGTGGCGACCATCG90.27413950654888825No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT90.27413950654888825No Hit
CTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCG90.27413950654888825No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG90.27413950654888825No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.27413950654888825No Hit
GTCCGAGATGAATCCGCGTGCAATGTTGACGCGCTGCTGCTCGCCGCCGG80.24367956137678953No Hit
GTGCCGCGGGTGGCGACCATCGACGTCGTCGCCGAGCCGTTGATCGTCAA80.24367956137678953No Hit
GTGCTAACTCTTTAATAGCCTTCAGTGACTGTGAGATGCCGTCTACGAGT80.24367956137678953No Hit
GTCCGGGGGGGTCACTTATCCTGGGCTTCATCCAATGGTGGGTGCTAACT80.24367956137678953No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA80.24367956137678953No Hit
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA80.24367956137678953No Hit
CGTTAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGCTG80.24367956137678953No Hit
TTCCTGGAGATTGTCTCGTACGGTTAAGAGCCTCCGCCCGTCTCTGGGAC80.24367956137678953No Hit
ATATTTGGTCCGGGTTATTATCGTCGCGGTTACCGTAATACTTCAGATCA80.24367956137678953No Hit
GATTACCGCTGCGACAGCGGCCGGATCGGCATCCGCCACAACGGCAGGGT80.24367956137678953No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC70.21321961620469082No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.21321961620469082No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT70.21321961620469082No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA70.21321961620469082No Hit
GTCCAGCAGCAGGATCGGCAGGTCCGAGATGAATCCGCGTGCAATGTTGA70.21321961620469082No Hit
GGCTATATTTGGTCCGGGTTATTATCGTCGCGGTTACCGTAATACTTCAG70.21321961620469082No Hit
GGTTTCCCCCTAATCGAGACGCTGCAATAACACAGGGGCATACAGTAACC60.18275967103259214No Hit
CCGCTGCGACAGCGGCCGGATCGGCATCCGCCACAACGGCAGGGTTGTTG60.18275967103259214No Hit
GGGTTATTATCGTCGCGGTTACCGTAATACTTCAGATCAGTTAAGTAGGG60.18275967103259214No Hit
TAGTAGCCTAGAGCGCCAGGGGCGGAAATTCGCCTGAAAAGTTTTGCCGG60.18275967103259214No Hit
GTTGACGCGCTGCTGCTCGCCGCCGGAGAAGGTCGACGGCGGCAAGGACC60.18275967103259214No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA60.18275967103259214No Hit
GTATCAACGCAGAGTACATGGGTTGACCTCAAATCAGGTAGGACTACCCG60.18275967103259214No Hit
TCGCAATCCTGCGTAATCAACGCCGCAACTTTACGTCGGATTAGCTCTTC60.18275967103259214No Hit
CAATAGGATTGTAGCCCAGGATGAGTCCCTCAGCGTGACGCAGTAAACTA60.18275967103259214No Hit
CATATAACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTAT60.18275967103259214No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.18275967103259214No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT50.15229972586049345No Hit
GAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTACC50.15229972586049345No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG50.15229972586049345No Hit
CAGTTAAGTAGGGCCATATGCCTCGGGAATAAGCTGACGGTGACAAGGTT50.15229972586049345No Hit
GTATCAACGCAGAGTACATGGGAACGCTTGAGGAAGTAAAAGAAGCGGAT50.15229972586049345No Hit
GCAATATGCACTGCCGCGTCTGACGGGACAAGGGATCAACCTTTCCCGGC50.15229972586049345No Hit
CGGTTACCGTAATACTTCAGATCAGTTAAGTAGGGCCATATGCCTCGGGA50.15229972586049345No Hit
CTATTAAAGAGTTAGCACCCACCATTGGATGAAGCCCAGGATAAGTGACC50.15229972586049345No Hit
GTCTCGTACGGTTAAGAGCCTCCGCCCGTCTCTGGGACTATGGACGGGCA50.15229972586049345No Hit
GTACATGGGCAGCTTTCCACTGTCATTCGCCATAGAAGCCGATACCGTGA50.15229972586049345No Hit
TATCAACGCAGAGTACATGGGAACGCTTGAGGAAGTAAAAGAAGCGGATT50.15229972586049345No Hit
GGATTACCGCTGCGACAGCGGCCGGATCGGCATCCGCCACAACGGCAGGG50.15229972586049345No Hit
AACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA50.15229972586049345No Hit
GGATTGTAGCCCAGGATGAGTCCCTCAGCGTGACGCAGTAAACTAGTAGC50.15229972586049345No Hit
ATCTAATTCACTTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA50.15229972586049345No Hit
TATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA50.15229972586049345No Hit
TATCAACGCAGAGTACATGGGATTACCGCTGCGACAGCGGCCGGATCGGC50.15229972586049345No Hit
GGCTATATTTGGTCCGGGTTATTATCGTCTCGGTTACCGTAATACTTCAG50.15229972586049345No Hit
GTGCAATGTTGACGCGCTGCTGCTCGCCGCCGGAGAAGGTCGACGGCGGC50.15229972586049345No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG50.15229972586049345No Hit
GACCACAGCCGCTCCGGAATGTTGAGCCGGCGCAGCAGTTTGCCTGCACG50.15229972586049345No Hit
CCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGA50.15229972586049345No Hit
CTGCAATAACACAGGGGCATACAGTAACCAGGCAAGAGTTCAATCGCTTA50.15229972586049345No Hit
GTCTACGAGTGGCACGAATCGCACGGATGTTTGGTTAAAGAACAGTCGCA50.15229972586049345No Hit
GCTCGTTCTTTGGTCGCAATCCTGCGTAATCAACGCCGCAACTTTACGTC50.15229972586049345No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA50.15229972586049345No Hit
GCATGAAACTCCAAGGTCCGGGGGGGTCACTTATCCTGGGCTTCATCCAA50.15229972586049345No Hit
GGTATCAACGCAGAGTACATGGGTTGACCTCAAATCAGGTAGGACTACCC50.15229972586049345No Hit
CTGTGAGATGCCGTCTACGAGTGGCACGAATCGCACGGATGTTTGGTTAA50.15229972586049345No Hit
CAATAACACAGGGGCATACAGTAACCAGGCAAGAGTTCAATCGCTTAGTT50.15229972586049345No Hit
ACTTTACGTCGGATTAGCTCTTCTTTGATTAGCATGAAACTCCAAGGTCC50.15229972586049345No Hit
GTTTTCCTCAAATCCCGCCACGAAACTAAGCGATTGAACTCTTGCCTGGT50.15229972586049345No Hit
CTGCGACAGCGGCCGGATCGGCATCCGCCACAACGGCAGGGTTGTTGACC50.15229972586049345No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA50.15229972586049345No Hit
GGTTATTATCGTCGCGGTTACCGTAATACTTCAGATCAGTTAAGTAGGGC50.15229972586049345No Hit
GGATTAGCTCTTCTTTGATTAGCATGAAACTCCAAGGTCCGGGGGGGTCA50.15229972586049345No Hit
CCGTAATACTTCAGATCAGTTAAGTAGGGCCATATGCCTCGGGAATAAGC40.12183978068839477No Hit
GAGTGGCACGAATCGCACGGATGTTTGGTTAAAGAACAGTCGCAGTTTTC40.12183978068839477No Hit
ATCCTGCGTAATCAACGCCGCAACTTTACGTCGGATTAGCTCTTCTTTGA40.12183978068839477No Hit
TCACTGTACTTGTTCGCTATCGGTCTCTCGCCAATATTTAGCTTTAGATG40.12183978068839477No Hit
GAATAAATCCTACTGTATCTGAAAGAAGAACACTGTAGCCGCTTGGCAGG40.12183978068839477No Hit
CCCAAGAAGCGGCCATAGCCCAGATGCGAGGTGGAAAAGTCACACTAGAG40.12183978068839477No Hit
ATTCTCACCCTCTACGATGCCCTATTCCAAGGGACTTGTCCATAGAGCCG40.12183978068839477No Hit
ATTCAAGACGTTAACAGTTCTTGGCGCAAATAGCGCTGAATCACTTCTTT40.12183978068839477No Hit
GTTCCTGCGCGCGGTGCCGCGGGTGGCGACCATCGACGTCGTCGCCGAGC40.12183978068839477No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA40.12183978068839477No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA40.12183978068839477No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC40.12183978068839477No Hit
GTATCGCAAAGCACGGTTCTTCCATGGCAAGTACGGGATTCTCACCCTCT40.12183978068839477No Hit
GTATCAACGCAGAGTACATGGGGGGAATTCGAGCTCGCATTTTGAAAATT40.12183978068839477No Hit
CTCTAAGCTCGGCAATCGCTCTTGCCGTGCGAGATGCTAGCAAAAAGGTG40.12183978068839477No Hit
ATGTCAGCCAGTTCCTGCGCGCGGTGCCGCGGGTGGCGACCATCGACGTC40.12183978068839477No Hit
GATGTTTGGTTAAAGAACAGTCGCAGTTTTCCTCAAATCCCGCCACGAAA40.12183978068839477No Hit
TCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGA40.12183978068839477No Hit
GCGCGGTGCCGCGGGTGGCGACCATCGACGTCGTCGCCGAGCCGTTGATC40.12183978068839477No Hit
CTTCAGATCAGTTAAGTAGGGCCATATGCCTCGGGAATAAGCTGACGGTG40.12183978068839477No Hit
CCTGCGTAATCAACGCCGCAACTTTACGTCGGATTAGCTCTTCTTTGATT40.12183978068839477No Hit
GCATCCGCCACAACGGCAGGGTTGTTGACCTTGCGACCGCCGAGCCGCGT40.12183978068839477No Hit
ACGCAGAGTACATGGGATTACCGCTGCGACAGCGGCCGGATCGGCATCCG40.12183978068839477No Hit
CAGTAAACTAGTAGCATCCCGATCTTTTCCCTATCTAATTCACCTCCTAT40.12183978068839477No Hit
ACAGTAACCAGGCAAGAGTTCAATCGCTTAGTTTCGTGGCGGGATTTGAG40.12183978068839477No Hit
GCGAATGACAGTGGAAAGCTGTGTGTTGATTTCATGAATGCGATTTCTGA40.12183978068839477No Hit
GATTAGCTCGAGTTGCCCCTTTGCCCGATCCCGGAAGATACGCTCTAAGC40.12183978068839477No Hit
GTACATGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCTCCGC40.12183978068839477No Hit
CGTCAGGTGCTGAGCATCCGCCGCTCGACGATCGGCTATGTCAGCCAGTT40.12183978068839477No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC40.12183978068839477No Hit
GTCTTACATAGAATTGGTCACCTCATCGCACGGGATTCTCACCCTCTGTG40.12183978068839477No Hit
CCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGATCCCGGAAGATA40.12183978068839477No Hit
TTCCATCACTGTACTTGTTCGCTATCGGTCTCTCGCCAATATTTAGCTTT40.12183978068839477No Hit
ATGTTGAGCCGGCGCAGCAGTTTGCCTGCACGCTCGCGGGCTTCCTCGCG40.12183978068839477No Hit
ATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGCTCAACGCTTGA40.12183978068839477No Hit
CTCTGGGACTATGGACGGGCACGCTCATATCAGGCTATATTTGGTCCGGG40.12183978068839477No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.12183978068839477No Hit
GGTTAATAATGCCTAGCCTAAAGGTTCTTGCAGAGCAACATCATATACCC40.12183978068839477No Hit
ATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGATCACG40.12183978068839477No Hit
CGTCAACGGCGTGGCGCGCGAGGAAGCCCGCGAGCGTGCAGGCAAACTGC40.12183978068839477No Hit
GCTGCAATATGCACTGCCGCGTCTGACGGGACAAGGGATCAACCTTTCCC40.12183978068839477No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA40.12183978068839477No Hit
ACACAGGGGCATACAGTAACCAGGCAAGAGTTCAATCGCTTAGTTTCGTG40.12183978068839477No Hit
CTTTAATAGCCTTCAGTGACTGTGAGATGCCGTCTACGAGTGGCACGAAT40.12183978068839477No Hit
CTGCTGCTCGCCGCCGGAGAAGGTCGACGGCGGCAAGGACCACAGCCGCT40.12183978068839477No Hit
AGATGAATCCGCGTGCAATGTTGACGCGCTGCTGCTCGCCGCCGGAGAAG40.12183978068839477No Hit
AAATATGACAAGGAGTAGTAGTGTGGATGTTGTTGTTAGACACTTCTTTT40.12183978068839477No Hit
GCTTCATCCAATGGTGGGTGCTAACTCTTTAATAGCCTTCAGTGACTGTG40.12183978068839477No Hit
GTACATGGGAATGATACGGCGACCACCGAAAAAAAAAAAAAAAAAAAAAA40.12183978068839477Illumina Single End PCR Primer 1 (95% over 22bp)
ATTTGGTCCGGGTTATTATCGTCGCGGTTACCGTAATACTTCAGATCAGT40.12183978068839477No Hit
GCTGCATTCCGCTCAACGCTTGAGGAAGTAAAAGAAGCGGATTTAATTCT40.12183978068839477No Hit
TATCAACGCAGAGTACATGGGTTGACCTCAAATCAGGTAGGACTACCCGC40.12183978068839477No Hit
GTATATAACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTA40.12183978068839477No Hit
CCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATC40.12183978068839477No Hit
CTCTTGCCGTGCGAGATGCTAGCAAAAAGGTGTACTTCTCAGCGGAGCAG40.12183978068839477No Hit
TGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTTCCGCCCCTGGCGCTC40.12183978068839477No Hit

[WARN]Adapter Content

Adapter graph