FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003643705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003643705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4433
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT200.45116174148432214No Hit
GTATCAACGCAGAGTACATGGGACTGGCTGCTCTGAAAAGCCATCTTTGC120.27069704489059326No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.20302278366794496No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG90.20302278366794496No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80.18046469659372885No Hit
CCCTTTGGCTGCTCTGCCTCACTCGAAGTAGCAGGTGGAGTTTCATTCTC70.15790660951951274No Hit
GTATCAACGCAGAGTACATGGGACTCTGGGCAGGATCCAACGTCGCTCCA60.13534852244529663No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA60.13534852244529663No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.13534852244529663No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA60.13534852244529663No Hit
GTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCCCTGCTGTCAT60.13534852244529663No Hit
CATACAGCCTCTGGAAACCCAACCTTCCAGCCCTCAGTCCTGCCCTCAAG60.13534852244529663No Hit
GGGCCAGGCTGTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCC60.13534852244529663No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG60.13534852244529663No Hit
CACGAGCACCCACCCCGGCACGGAGACCCAGCACCGCGGAATGGAGCCCC50.11279043537108054No Hit
GCTCTTGACGACTCCACAGATACCCCGAAGCCATGGCAAGCAAGGGCTTG50.11279043537108054No Hit
CTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAGAACCTCGCAATGACAG50.11279043537108054No Hit
CTACAAAAACAAACAAACAAACAAAATTAGCCAGGCGTGGTGGTGTGAAC50.11279043537108054No Hit
ACGCAGAGTACATGGGACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTT50.11279043537108054No Hit
GTACATGGGACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTTCCTCATC50.11279043537108054No Hit
GTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTC50.11279043537108054No Hit
GCATAATTGAGCAGCTTCTCGATCAGGTCCACGTGGGCCAGCAGCATCCG50.11279043537108054No Hit
AAATAGAGCAGATCCGCAAACCCACACCCACTCCCAAAGTCAGTCTACTG50.11279043537108054No Hit
TCCCGGAGGCGGACCGGCTTACTGGGTAACTTCCTGATGTTGCCATGGCA50.11279043537108054No Hit
ATACAGCACTACAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAAT50.11279043537108054No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)