FastQCFastQC Report
Tue 10 May 2022
EGAF00003644252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43375
Sequences flagged as poor quality0
Sequence length140
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA890.20518731988472622No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC880.20288184438040346No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC720.1659942363112392No Hit
ATCCATCACCGTGGCTTTCGAGGATGGCACCCAGCGTTGCATCCACCCGG710.16368876080691644No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC630.1452449567723343No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT560.12910662824207494No Hit
GTATCGGCTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCAT530.12219020172910663No Hit
GCAATATGCACTGCCGCGTCTGACGGGACAAGGGATCAACCTTTCCCGGC520.11988472622478386No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA520.11988472622478386No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA520.11988472622478386No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA510.11757925072046109No Hit
GTCTACGCCCATGCGCACGGTTCCGTGGCAGCGAGCAAGGCACAAGCTGC490.11296829971181556No Hit
GTTCGGCACGGAGGCCGTGCAGGGCCAGATCGCCGCGCAGCTCTCGGGCC480.1106628242074928No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT480.1106628242074928No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT480.1106628242074928No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT470.10835734870317003No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG470.10835734870317003No Hit
GTACATGGGAAGACCTCGCGCGTCGTCAATGGCGCCGCCAGCAAGGCCCC460.10605187319884725No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT450.1037463976945245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)