FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003644376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGTGCATCCGCACGATCCGGGCGCCGCGCTCGATGCAGGCCACCATCGC210.0No Hit
CAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCACCC210.0No Hit
GCGGTCAAACAGTATGTCCCTAGGGGACTTAAGCGCGGTGGCCTCCCCTA15.0No Hit
GTACATGGGGGCGCGGGAGCTGGGAGGCTGCGAGATCCCTACCGCAGTAG15.0No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC15.0No Hit
GCGGCACTGCGTCCGGAATTGGTAAGTTCTTGGTCTCACTGACTTCAAGA15.0No Hit
CAACACACTTGCTTGCCAGGAATTGTGTTAGCTGCTTGCAAATATCTGTC15.0No Hit
ATAGTAGAGACAGGGTTTCACCATGTTGGCCAGGTTGGTCTTGAACTCCT15.0No Hit
CTGCTCCAGTTTCTCCTGGGCCTCCTTCACGGATTCAGAATACTTTTCCA15.0No Hit
GTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTC15.0No Hit
ACACCTGTCCTCATCTGGAACAAGGTAAAAAGGGGTCACTATGGAGTTCA15.0No Hit
GAAATAACGCGCGCCCAAACTCGTGATGGCCACAGATTCATGGCATTTAA15.0No Hit
GCGCAGACAATGGTCGATACTTCGACCACGCCCGGCATTGCAGGGTCGCT15.0No Hit
GTCCGGCACGCCGGACTCGAGTTGGGAGATCATCGGAAGCGGTCTCGGCG15.0No Hit
GCCCAGGATGAGTCCCTCAGCTTGACGCAGTAAACTAGTAGCATCCCGAT15.0No Hit
GGAGGAGCACCCCGAGCAGTACTCCTCCGACGGCCGGGCGCAGCCACTCC15.0No Hit
CACCCGGCCAGCGTCTCCGACGGCTGGATGCCCTCCAGCGTGGAGCTGGC15.0No Hit
GGCTCATACCTATAATCTCAGCACTTTGGGAGGTCAAAGTAGGAGGGTCG15.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)