FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003644390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43
Sequences flagged as poor quality0
Sequence length140
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCGACCGCATCCTTTTCGCCGCGACGAAAGCCGACCACCTCCACCACA24.651162790697675No Hit
ACGCCGCGCATCGGCGGGCAGTTCGTCGACTGGCGACCCGACGGCGGCGA24.651162790697675No Hit
CATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGA24.651162790697675No Hit
CCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT24.651162790697675No Hit
GTGGAGGAGCTGAAATACGCTGACATCCGCAACCTCGGGGCCATGATTGC24.651162790697675No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG12.3255813953488373No Hit
GCCGGGGTTGCGCGCCCTGGACGCGGCGCAGGTGGACGACCTGCTCGCCA12.3255813953488373No Hit
CATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCTAGGG12.3255813953488373No Hit
GTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT12.3255813953488373No Hit
CTGAACCACCCATGAAGAAGTTCCCCTTCCGCTGAGTTACGAGGACGTTG12.3255813953488373No Hit
GGACATTTTCTCAAACAGCAAGTGGGGCCCATGGAACTGAATCTTTACTC12.3255813953488373No Hit
CTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCA12.3255813953488373No Hit
CTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTAC12.3255813953488373No Hit
ACCGATGGGAAGAAGAAGATCAGCACTGTGGTGAGCTCCAAGGAAGTGAA12.3255813953488373No Hit
ACCAAGAAGGAACAGAGGTCTCTGTTCCTTCTTGGTAGCCGCCCCCACCA12.3255813953488373No Hit
CCTCCGCGACCAGTGGGGACTCCGGATCCACCCATCCATGTTGCCGAGTG12.3255813953488373No Hit
GACGGGTTGGAGGTCACGCCCCGGATGCCGATCTCGTCGATATGGTTCTG12.3255813953488373No Hit
GTACATGGGGACCCACCCGCCGCACGTACTAAGGAAGGCGCACAGCCCGC12.3255813953488373No Hit
ATATCATAATATAATTTTATTTTACTGCAGAGCTTTGAAAGGAGTTTTGC12.3255813953488373No Hit
GTGCTGGGGCAGTAGTCATGGCAGACTCCCGGCCTGGGCCCCCAGGATTC12.3255813953488373No Hit
AGAACTAAGAGCTAAATCTTGTTAAGTAAATACGGGGTTTCAGGGGTGAA12.3255813953488373No Hit
AGACCAACACGCCGGAATGGGGGCTGGGCGCCAACACCCGCAACGCTGTC12.3255813953488373No Hit
CCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAG12.3255813953488373No Hit
GCCCGCCTCCTTCGGCGAGGCGACGCTCCAGCGAGACGCGCGCCGCGGCG12.3255813953488373No Hit
CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGAC12.3255813953488373No Hit
GGCGCAATCTTGGCTCACTGCAAGCTCCACCTCCTGAGTTCACGCCATTC12.3255813953488373No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA12.3255813953488373No Hit
GCTCGAGATCTCCCACAAACTATGGACCAAATCCAAGACCAGTTTAATGA12.3255813953488373No Hit
ATCGCGATGATGCCGGCGATGAGCGCCGCCACGGCGGCGAGGCTCGCGAG12.3255813953488373No Hit
GGCGAGGGTCACATTTCACCATCTGGTTGGCTGGCTCAAAGCAAGCATTG12.3255813953488373No Hit
GCCCGCACCCGTAGACGGTGGCCCGCGACGACGGCCCCGACAGCAGCATC12.3255813953488373No Hit
CCGAATTACTAGTGACTAGTTTACTAACTAGGTCATTCAAGGAAGTCAAG12.3255813953488373No Hit
AACAAGTTGCTGCTCTACAGGGTGGTAGACAACGAGGGGACCCTGCAGCT12.3255813953488373No Hit
CGTCGTGTCCGGCGCGGCGCTGGTGGCGATGACCGCCGTGGTCGCCTGGG12.3255813953488373No Hit
CTCCCGGGATGGGTGTTCCGTATCCCGCCTTCCTCACGGATCGCAGGCGT12.3255813953488373No Hit
AACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGG12.3255813953488373No Hit
CCTTTGGAGGATTTGACAGCCATCAGATGAATGCTTCAAAAGGAGGCGAG12.3255813953488373No Hit
GTGCCAGAGGGCTAGCTTACTCTCTTTACACCATATGAAGATGTAACCTG12.3255813953488373No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)