FastQCFastQC Report
Fri 10 May 2024
EGAF00003644395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25
Total Bases3.5 kbp
Sequences flagged as poor quality0
Sequence length140
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATTGAGCCACCCACGGCGTGATCTCTGAGGCATACGGGGCGGGATCGA312.0No Hit
GTCCGCTGCAAGCGCCCCGCGCGCGATTTGCCTGCTCGGCCCGACCGCGT312.0No Hit
ATTCAGTTTTGTATGTTTGAATATCCTCTCACCATGTTCAGCATAAAGTA28.0No Hit
GCTTGCCGATGTGCTGGTGGTTGCCACCTCCAAAAGGATGCTCCACAGGA28.0No Hit
GTGTGGAAGCACCGCGTGTTATCACTTCTGCTAAAGCAGAAGGTGCAGAG28.0No Hit
AGCCAGAAGGCAGGGAGAGCCAGAGGAACATGGTGTCCAGCGTCTCCTAA14.0No Hit
CGCCTATTGAAGGAACTCCTTACTGTTTTTCACGAAATGATTCTTTGAGT14.0No Hit
TCCCTGTACTTCGATTATCACCACCATCGCGATATTAAAGAAGATTTTCG14.0No Hit
GACAAGCTGCTCATCGACGACTTTTACAGCGGCGCGCCCTGGCGGGTGAG14.0No Hit
GCTTAGGGCCTCCTGCTCACAGAGGTTCCAAGACAGCCGCCACCCCAGCC14.0No Hit
GCCTCGCCCAGGGTCAACGTCAGTGACAGGCTGGGCTTCCGTTCCAGCTC14.0No Hit
GTGTCAGACGGGAGAACAGGACCATGTTGTCCATCGGAGACTTCGCTCGG14.0No Hit
CCCTTGGCAGATCGGTGTGTATGTTTGGAGCTCGTATTTCCCGATGCGGT14.0No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA14.0No Hit
GCACCGGAAAGGCCAAGCTCTCGACCGGCATCGGCTTCTTCGACCACATG14.0No Hit
GTTCTTGACGAAGCCGGCGCCATACTTGCCGCGCCATTCGCTATCGACCT14.0No Hit
GTTGTAATAAGAGTAGCCATATCGGAAATCTTCATTCCAAAGTTTGAGGG14.0No Hit
CATCAGGCGGCCTGCCGCCTGCTCGCACTGGAACGGGGCCGTAGCTCAGA14.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)