FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003644431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Sequences flagged as poor quality0
Sequence length140
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCAC27.6923076923076925No Hit
CCCTTAGACGTCTTGGTATACGGACAACTGATGGACCCACGTTGCGAGTC27.6923076923076925No Hit
ACTTAACACAATCCTTTAACCCTCTAAACTTAGGTGAGAAATTCATATTC27.6923076923076925No Hit
CCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCG13.8461538461538463No Hit
TCCTTCTCGATACTGACGGCTCCGTGCTGACATTCTGAGCTCTGGAGTCA13.8461538461538463No Hit
GAGCCGCATCGCCACGCCTTTCATCAGAGCGCTTTCCGATCAGACGGAAT13.8461538461538463No Hit
ATGAAGGTCATGCCTGCCCCGACGAGGATGGCCAGGTAGCCAGTCAACCA13.8461538461538463No Hit
GAACAACTGGACGGGGCTGGAGTTGGGGAAAGAACCAGAAACAGAGCTGG13.8461538461538463No Hit
ATACAGGTCATGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCTCTC13.8461538461538463No Hit
AGTAAGAATAAATGTCATAAAAAAGAGAAAGTGAGAAATGTGAATTATGA13.8461538461538463No Hit
CTTCATGCTGGTGCAGCCAGAAAGCTCAAACTTGATAGGCTTGGAGATTT13.8461538461538463No Hit
CCCTGACCTTGGGCAGCCATGATTTCTTATGGTTGCGATTGCGTTGGGGG13.8461538461538463No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTAT13.8461538461538463No Hit
GAAATAAAAGTTTAGATGAGGAAAAAGCAATCTCTGTCTCTTATACACAT13.8461538461538463No Hit
AGAATCTCTGAAAAACACACAATTACATGGGCAACTTGCTTTTGAATGAC13.8461538461538463No Hit
GCAACAAGACATATTGTCACAAGACTGTCCAAGATCAAAACTAAAGAAAA13.8461538461538463No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13.8461538461538463No Hit
TTGATACCACTGCTTCCCATGTACTCTGCGTTGATCTGTCTCTTATACAC13.8461538461538463No Hit
AATTTGGACAGACATGCTTCCAGTCTTCTAATGGCAAATCATTAGTATGA13.8461538461538463No Hit
AATGGAATCATTGGATGTACTCGAATGAAATCATCGAATGGACTCGAATG13.8461538461538463No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC13.8461538461538463No Hit
GTCTGGAACTCCTGACCTCAAGTGATCCACCCTGCTGGGCCTCCCGAAGT13.8461538461538463No Hit
ATCCAAGGAGCAAAACTGCGTCGGTTTAGCTGAGATTGCACCGTTGTTAT13.8461538461538463No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)