FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003644461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA63.5502958579881656Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATG31.7751479289940828No Hit
ACTCTGGTTTTGTTTGGTTTGCCGCCAGGAGTGACTGTGTTGTTCTTTGC31.7751479289940828No Hit
GGCCTGGACCGTCTTCCAGAACTGTAGGGAGGCTGATGAGGAAGCAGACA31.7751479289940828No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA31.7751479289940828Clontech Universal Primer Mix Long (96% over 26bp)
ACAACTTCCAGGCCAAGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCA21.183431952662722No Hit
GTAATAACTGTGACAGCAACAAGTATCTTATTCCCATTTCACAGATGAAG21.183431952662722No Hit
CGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCT21.183431952662722No Hit
TGCCTGTACTCCCGACTGACCATCTGTGAGTTCTGAGAGGCATTTAGGCC21.183431952662722No Hit
ATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAA21.183431952662722No Hit
GGCCATTATGCTGCTGGATTGGACCTCAATGACACCTACTCTGGGAAGCG21.183431952662722No Hit
AGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCA21.183431952662722No Hit
GCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGG21.183431952662722No Hit
GCAAAGAGGTCCTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGG21.183431952662722No Hit
TCCCTGCCTGGCAGGCCGTGGGATCCAGGAGTGCCGGGAATACCAGGGCT21.183431952662722No Hit
GGAAGGCCGGGTCCCCTCCGGAGGGTGCTGAGCCTGCATCTCGCCCCTCT10.591715976331361No Hit
GCTGTCATTTCAGGAGGCCGACCCAAGTCTCCCTGCTGTCATTTCAGGAG10.591715976331361No Hit
ATCAACGCAGAGTACATGGGGTGAAAGCTTGATTCCTGCCATATGGAGGA10.591715976331361No Hit
TGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAG10.591715976331361No Hit
GCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA10.591715976331361No Hit
GATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCTGAGTGAGC10.591715976331361No Hit
GATCGCCCCTACAGCCATGCTCTGGTGGCTGGAATTGACCGCTACCCCCG10.591715976331361No Hit
GCAGAGTACATGGGGCCTTTCCGGCGGTGACGACCTACGCACACGAGAAC10.591715976331361No Hit
ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATA10.591715976331361No Hit
AGACTGGGGATGCTCTCTGCAGGCCAAGCCCGCAGTGCCTACGTCTAAGC10.591715976331361No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.591715976331361Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATGTATTACATCCCTAGAAAAAGAATCCCAGGATTTTCCCTCCTGTGTGT10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT10.591715976331361No Hit
GTGTAAAGGGTGGTGGTCACGTGGCCCAGATTTATGCTATCCGTCAGTCC10.591715976331361No Hit
CTGTAACAATGTTATCAGTAATGCTTTAAACCTGTCTCTTATACACATCT10.591715976331361No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT10.591715976331361No Hit
TCCTGGACTCGAACAATCCTCCCACCTTAGCTCCCTGAGTAGCTGGGGCT10.591715976331361No Hit
CTCTGCAGGCCAAGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCAGAG10.591715976331361No Hit
GGCTGGAGTGTAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCTTCCCA10.591715976331361No Hit
CCACCACCACCACGATAAGAAGGCGTTTCAGGTGCACTGGGCAGCAGGGA10.591715976331361No Hit
AGTTAAGAGAGAGATGACTGATTTGGCAAAGTGGAGGTGTTTGTAATCTT10.591715976331361No Hit
CGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCG10.591715976331361No Hit
AGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGAC10.591715976331361No Hit
GGCCTGCAGAGAACATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAG10.591715976331361No Hit
GGTGCTATGCTCTCCTCTCCTCCCCCATGTACTCTGCGGTATCAACGCAG10.591715976331361No Hit
GGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGAGGGTGCT10.591715976331361No Hit
ACCCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGA10.591715976331361No Hit
TATCAACGCAGAGTACATGGGCGACCGGGCAAGCTTTCTTCCTCGAGATG10.591715976331361No Hit
GCTGAAGTTGGTGGGAGGTGGGCCAGGCGGCCACCAGGGGGCTGGCCCAC10.591715976331361No Hit
ACATAAATTAACCCATTTATTATAGGCCAGTGATGTCTCAAAGAGTAGAG10.591715976331361No Hit
CTTAAGGAACAAGTGATTATGCTACCTTTGCACGGTTAGGGTACCGCGGC10.591715976331361No Hit
GTCCTGGGGCTTCATCACATCGGGCAGCTCTGGCGGGCTGGAAAACGGCT10.591715976331361No Hit
CATTATAATCTTCTCATAAATAATTAGAATAAATGGATTCTTACAGGCAA10.591715976331361No Hit
ATTATGTACTATTCAATCTTTACACAATGTCACGGGACCAGTATTGTTTC10.591715976331361No Hit
TAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAA10.591715976331361No Hit
TTTTTGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATG10.591715976331361No Hit
GTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCTTT10.591715976331361No Hit
GGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCG10.591715976331361No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.591715976331361No Hit
TCCTGAGCTTTTCCAAGGTTCTGTGGATTCTTTCTTATGGTATTTATCTC10.591715976331361No Hit
GTACAGAACTCAGAGGAAAAAAGAAATTAAATTTTAGCTTTCTGGAGAGC10.591715976331361No Hit
GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCAC10.591715976331361No Hit
GGAAAGGACGGCGCCGCGGCCCCCAAGCCCGCGCTGACCGTCACCGTCGC10.591715976331361No Hit
CGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTC10.591715976331361No Hit
GTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGC10.591715976331361No Hit
GTTTAACCTCACGGCCCATGATTACGTCATCCAGACTACTCGAAATGGCG10.591715976331361No Hit
CTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCA10.591715976331361No Hit
AAAGCCGCCAGGAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCA10.591715976331361No Hit
CTGTGAAGGAAGAGGGGGGAAACGGTCCCCTGATGAGGAAGGGCCATAGA10.591715976331361No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTAAACCACCC10.591715976331361No Hit
TGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCA10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
GACCAGCTGGGGCAGCATGCGGCCCAGCAGGTCTGCCGCCTCGTCCTCCG10.591715976331361No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC10.591715976331361No Hit
CCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGC10.591715976331361No Hit
GCTTCGGCATCCTCATCTTCTCCCTCATCGTCACCTACTGCATCAATGCC10.591715976331361No Hit
ATGAAGACTGCTTTTCCATTTCTGTAAAAAATGCTGCCATGATTTTGATA10.591715976331361No Hit
CTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCACCCTGTGTG10.591715976331361No Hit
CCACCGAGATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGTAAAA10.591715976331361Illumina Single End PCR Primer 1 (95% over 21bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTT10.591715976331361Clontech SMART CDS Primer II A (100% over 26bp)
ATGTATTACATCCCTAGAAAAAGAAACCCAGGATTTACCATCCAGTGTGT10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT10.591715976331361No Hit
CCATTCCGGCTGGGCGCCAAGGCTGCCGACGGCCCGGCGGGGCCTGCGCA10.591715976331361No Hit
CTCTCCTTGGTCCTGGAACAGCGCTACTGATCACCAAGTAGCCACAAAAT10.591715976331361No Hit
ACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCACCTGCTGC10.591715976331361No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT10.591715976331361No Hit
GCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGAA10.591715976331361No Hit
TCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGC10.591715976331361No Hit
CTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
TCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCA10.591715976331361No Hit
ACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCAC10.591715976331361No Hit
CCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCA10.591715976331361No Hit
ACATTTAATCTGTCCAATTGTTTAGATTACAGCCCAAACCTACATGTGAA10.591715976331361No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA10.591715976331361No Hit
GGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAATATG10.591715976331361No Hit
CTCTTTCCCTACACGACGCTCTTCCGAAAAAAAAAAAAAAAAAAAAAAAA10.591715976331361Illumina Single End PCR Primer 1 (96% over 27bp)
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA10.591715976331361No Hit
CCCAATTAACAGGCCTGTTTTCTCTTTCATTAAAATCACTTTTAGAAAAA10.591715976331361No Hit
GCTTTAAATGACGCAATTCTCCCTGCGTCATGGATTTCAAGGTCTTTTAA10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAT10.591715976331361No Hit
ACGCAGAGTACATGGGTGGTATCAACGCAGAAAAAAAAAAAAAAAAAAAA10.591715976331361No Hit
AGCTGCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTC10.591715976331361No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
CTATTTCTGTGTTTATTTGTGGGCGAGTGTTACTACAAAATAAAAAAAAA10.591715976331361No Hit
GTGCATTTTTGTTTTATAGGTGCTGTGTGATTTTTGCTTTAAAGAGTTTC10.591715976331361No Hit
GAAGCAGTGGTATCAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAATTA10.591715976331361No Hit
ATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAG10.591715976331361No Hit
CCACGGTGTCCACGAAGCTGGAATACCCGCGCTACTACTGGAACCCGAAC10.591715976331361No Hit
GGTTATTAGAAATTTTGCATGATACCTTGAAACTTCATTTGCTCATCTAT10.591715976331361No Hit
ATCAACGCAGAGTACATGGGATTCCGGCCTCGTGGCAGGGATGTCCACCT10.591715976331361No Hit
CAATCAGGCTGCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGC10.591715976331361No Hit
CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAAT10.591715976331361No Hit
GAGTACATGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGA10.591715976331361No Hit
GTACATGGGCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCA10.591715976331361No Hit
GTACATGGGGCTTTGGCAAGATGGCGGGGAGCGGCGTCCGCCAAGCTACT10.591715976331361No Hit
GGGACTCAGGAAAGGGAAGCATGTGAGTGATGAATAGGAGCCCTAACTGT10.591715976331361No Hit
GTATATGAAACTGCTTAAATAAGCTTGGAAAGATGGATCATTTTAGACAA10.591715976331361No Hit
GTACTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTCGTTTAAAACAACCC10.591715976331361No Hit
GGAGACGCACAATATATTTCACCCAAGTCTGTTTTGGATTTGCGCACACA10.591715976331361No Hit
ATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTGATTTCTGCCCAGTG10.591715976331361No Hit
GGAGAAATGGGAGCTTGGGGAGAGGATGGGAGTGGGCAGAGGTGGCGCCC10.591715976331361No Hit
CTCCACAATGGCGTCGGCCTCGGAGGGTGAAATGGAGTGTGGGCAGGAGC10.591715976331361No Hit
GTTGTTCCTTCACGGAATCCATGCCTGAATCTGCGGTATACAATTTTTAG10.591715976331361No Hit
GCCTCACTTAGTTACAGTTTTATGGATAATTGGGATATTCTTTGGTATAG10.591715976331361No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
GGCGATAGAAATTGAAACCTGGCGCAATAGATATAGTACCGCAAGGGAAA10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCG10.591715976331361No Hit
GTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGGTGAGCAGG10.591715976331361No Hit
TCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCAT10.591715976331361No Hit
TCTATACTGTGTCCTTAGCTCCACACAGTCAGGGCTTCCCTGAAATCTGC10.591715976331361No Hit
CTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAAC10.591715976331361No Hit
CTCTAAACCGAAATTCCTCTCTCACCATGGCGATGGCCGAACAGCCGGGG10.591715976331361No Hit
GGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCATGTCTCTTCAC10.591715976331361No Hit
ACAGAGTTTATTGGGTTTGTAACTGGACGAAGTCACACGTGTACAAAATG10.591715976331361No Hit
GCTGATCGCCTACAAGCCAGCCCCTGGCACCTGCTGCTACATCATGAAGA10.591715976331361No Hit
GAGAACATGGGAAGCAGTGGTATCAACGCATAGTACATGGGAAGCAGTGG10.591715976331361Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTTCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCCCAA10.591715976331361No Hit
GTACATGGGGGCCGCCTACTGAAGCCAGCGCTGCTCTGTGGGGTTCTGGC10.591715976331361No Hit
GGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCATCCTC10.591715976331361No Hit
ATGCAGCAGAACGCAGGGGGCCTCTGTAAGGCACATGGAGGTGATGGTGT10.591715976331361No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA10.591715976331361Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TATCTATAGAATATGCACAAAAGGAAATAAAAAAATTAAAAGTGTGTTAT10.591715976331361No Hit
GCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCAAGACTGG10.591715976331361No Hit
CCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAA10.591715976331361No Hit
AGTCTGGATGACGTAATCATGGGCCGTGAGGTTAAACCAGACCCCCCCAA10.591715976331361No Hit
TGGGAGCCCTGCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATG10.591715976331361No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTCCCATGTACTCTG10.591715976331361No Hit
GAGAGAAAGGCGGGCGTCGTCCCTTGTGCCCCGCGCAGGCCGACGCGCTT10.591715976331361No Hit
GGCGGGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCG10.591715976331361No Hit
CTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAG10.591715976331361No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT10.591715976331361No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTTTTCAATCAGGCTG10.591715976331361No Hit

[FAIL]Adapter Content

Adapter graph