FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003644462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTACGCCCGAGATGAAACAGAATTCTATTTGGGCAAGAGATGCGCTTA31.7751479289940828No Hit
AGGATGTCTCTGATGGGGGGCCAGCCGGAAGACGTCTTTCCTGGAAGAGG31.7751479289940828No Hit
GGCCTCACTGCTGCCATCTGTAAGTGAAGGAACTGGACCAGATGGGGAAT21.183431952662722No Hit
GCGTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTGGGATTAGACCG21.183431952662722No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA21.183431952662722Clontech Universal Primer Mix Long (96% over 26bp)
CTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACCG21.183431952662722No Hit
CTCCAGGGCAGCTGCCACCCGCTCCTTATCTGCAAGTTGCTTGTTCACTG21.183431952662722No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT21.183431952662722Clontech Universal Primer Mix Long (96% over 26bp)
ATCAGTGACAGTTGAAGATTTTTTTTTCCCAGAGCTTATGTCTTCATCTG21.183431952662722No Hit
GTGTGTGGGTCGCTGATTTCTTGGAGCCTGAAAAGAAGCAGGAGCAGCGA21.183431952662722No Hit
GATCAGCAGCTGCTGGTAGTCATACACCACGAGGCCAGTGGAGCCGATGG21.183431952662722No Hit
CCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGC21.183431952662722No Hit
AAGCAGTGGTATCAACGCAGAGTACTTGGGAAGCAGTGGTATCAACGCAG21.183431952662722Clontech SMART CDS Primer II A (100% over 26bp)
CTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGT21.183431952662722No Hit
CCATTGGATGAAGCCCAGGATAAGTGACCCCCCCGGACCTTGGAGTTTCA21.183431952662722No Hit
TCCGTCTTGTTTTGGGGGGGCTTAACTACCTGTTCAACTCTGACTGAATC21.183431952662722No Hit
TCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTTCC21.183431952662722No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA21.183431952662722No Hit
TATCAACGCAGAGTACATGGGAACAAATCCTGGAAACACCTCAAAACAGA10.591715976331361No Hit
GTGCGGACCAGGGGAATCCGACTGTTTAATTAAAACAAAGCATCGCGAAG10.591715976331361No Hit
ATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAACTTCCAGGCCAA10.591715976331361No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTCCCACATCAATAGATGGAGACA10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTT10.591715976331361No Hit
GTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAG10.591715976331361No Hit
GCCGCGGTTCCGCGCGGCGCCTCGCCTCGGCCGGCGCCTAGCAGCCGACT10.591715976331361No Hit
CCCAACTATACCAAAGAATATCCCAATTATCCATAAAACTGTAACTAAGT10.591715976331361No Hit
GGCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCGTTTGTGCATGG10.591715976331361No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.591715976331361No Hit
CCACCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGC10.591715976331361No Hit
GGTGCCGCTCTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGA10.591715976331361No Hit
CCTCCTTATTCCCCATCTGGTCCAGTTCCTTCACTTACAGATGGCAGCAG10.591715976331361No Hit
GTACATGGGAAGCAGTGGTATCAACGCATAGTACATGGGAAGCAGTGGTA10.591715976331361Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAA10.591715976331361No Hit
GATCTTACGGGCCGGCTGGTTGAACCACGTGGCCACGCGCCGCTGCCAGT10.591715976331361No Hit
GAGAAATAGGCTCGTTTATTTATTCATTGATCAACTGGCACTTCTTGAAA10.591715976331361No Hit
CTCCAAAAAAAAAAAAAAAAAAAAAAAAACTTTTTTTTTTTTTTTTTTTT10.591715976331361No Hit
ATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCC10.591715976331361No Hit
GCTGGTAGTCATACACCACGAGGCCAGTGGAGCCGAGTGAGGAGGGGGGA10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG10.591715976331361No Hit
CCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAACTT10.591715976331361No Hit
ATCCCTTTTTTGGTACCAACAGGCCCATGTACTCTGCGTTGATACCACTG10.591715976331361Clontech SMART CDS Primer II A (95% over 23bp)
GCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTC10.591715976331361No Hit
TTTAAAACCAGAACATTTATTGCATGACTAATCGTTGACATTCTTAAGAT10.591715976331361No Hit
GTTCTTGCCTGTCTTGTATCTCTCTTCAAACTTGACCTTGGCCTCCCGTC10.591715976331361No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTCTGCGT10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
CCGCTCTACTACATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGG10.591715976331361No Hit
CTCCCATCCACCTGTCTGTCCTGGCCTAATGCCAGGCTCTGAGTTCTGTG10.591715976331361No Hit
ATCTTTTTTTTTACCTTATTTCCTCCATTAGTACCTTCTTTGCTATTCAG10.591715976331361No Hit
AATCATCTTTATTCAGCTCAGGAGTGGGGTGGCTGGAAGCATAAGCTTCA10.591715976331361No Hit
GTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAA10.591715976331361No Hit
GTGCCATCGAGTCCGTCCTGCAGCAGATGCGCGGGACCGCGATACATTAA10.591715976331361No Hit
TATCAACGCAGAGTACATGGGGAAATCATTGATGACCACAGAGCTGGGAA10.591715976331361No Hit
CTTCTGTGGAGGACTCTACCTAAGGTCAGAGCAGCGAGATACCCCACCTC10.591715976331361No Hit
GTATCAACGCAGAGTACATGGGGGAGGAGAGGAGAGCATAGCACCTGCAG10.591715976331361No Hit
CCTGGTTACCACTGCCACCTTCTCCATCGGCTCCACTGGCCTCGTGGTGT10.591715976331361No Hit
CTGCCCCTCTGTTGGAGGCACAGTTTTAGAATAAGGAGGAGGAGGGAGAA10.591715976331361No Hit
GTACTTTTTTTTTTTTTTTTTTTAAAAAGTTTCAGCTCATGGCAACAGCA10.591715976331361No Hit
GGCAAGACACTGGGCGAGTGTGGCTTCACCAGTCAAACAGCACGGCCACA10.591715976331361No Hit
TCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCC10.591715976331361No Hit
GTCCAGGTTAACCATGTGCCCGTCGATGTCCTTGGCGGAAAACTCGTGCA10.591715976331361No Hit
ACCCAAAGATCTTACTGTGCTTCACAAACATGTTTGTTCTCTTACTCTCC10.591715976331361No Hit
CCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCTACAAG10.591715976331361No Hit
GAGTGAGCACCTGGTTACCACTGCCACCTTCTCCATCGGCTCCACTGGCC10.591715976331361No Hit
GTTTAAAGCATTACTGATAACATTGTTACAGCTGTCTCTTATACACATCT10.591715976331361No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTTTAAC10.591715976331361No Hit
TATCAACGCAGAGTACATGGGGAAATCATTGAAGACCACAGAGCTGGGAA10.591715976331361No Hit
CTTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAAC10.591715976331361No Hit
GCTGGGTGCAGTGGCTGAAGCCTGTAATCCCAGAACTTTGGGAGGCCAAA10.591715976331361No Hit
CCACCACCACGATAAGAAGGCGTTTCAGGTGCACTGGGCAGCAGGGAATG10.591715976331361No Hit
GGCCACAGAGGCGGGGCAGAAAGCCATGGACCAGCTGGCCAAGACCACCC10.591715976331361No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.591715976331361Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TACAAAAACGACTGCAGGAAGACCCCAACTACAGTCCCCAGCGCTTCCCC10.591715976331361No Hit
GACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTC10.591715976331361No Hit
GTAAAAAATGTATTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCCCG10.591715976331361No Hit
GCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCT10.591715976331361No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAATTAATCTGCGTTTATACCAATGC10.591715976331361No Hit
GCTTTGGAACAGGGCTCCTCGGGGTTTTCTTGCCAACTGTCTGAGCCCGG10.591715976331361No Hit
TTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCACCACCTCTGCCC10.591715976331361No Hit
GCCGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGC10.591715976331361No Hit
CCAGCAGCAGGAACAAACTGTGTTGGGTTATCTCTGCAGTGTTTTGGATC10.591715976331361No Hit
GGTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCC10.591715976331361No Hit
GCTCTTCATGTCCCCGCGGTCGAAGACGGCCACATACGTCCCCAAGAAGA10.591715976331361No Hit
GCATTGATGTCACAGCCTTCATTGGCCAGCTGCCGTGTGAAGGCTGTGAC10.591715976331361No Hit
GGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCC10.591715976331361No Hit
AGCTACAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTC10.591715976331361No Hit
CCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAAGGAAC10.591715976331361No Hit
GCTACAGTCGCTGTTAAATGTGCCTGAAAAGCAATTTGCAATCTTTGCAT10.591715976331361No Hit
CTCCATCGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGA10.591715976331361No Hit
GCCGGCGCCTAGCAGCCGACTTAGAACTGGTGCGGACCAGGGGAATCCGA10.591715976331361No Hit
AAAATATGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGT10.591715976331361No Hit
GTATCACCCTGCATGTAGTTTGCTTTGGTTTTCAAATCCAGCTAGATAAA10.591715976331361No Hit
CTGCGGGCTTGGCCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCAAGA10.591715976331361No Hit
CCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTA10.591715976331361No Hit
CTGTGAAGCAAAGGAATGTTGAGGATGGACAGAGAGAATCAGGGGAGTGG10.591715976331361No Hit
CACCGCAGGGACAAGCCCTGGAGAAATGGGAGCTTGGGGAGAGGATGGGA10.591715976331361No Hit
GGGCTAAGATCAAGCCACTGCACTTCAGCCTGGACAATAGAGCCAGATTC10.591715976331361No Hit
ACTCTGCGTTGATACCACTGCTTCCCAAGTACTCTGCGTTGATACCACTG10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
GAATCACCCTAGGACTTTCAATCAAAAGCTGGAAGTCCACCTTACAGAAA10.591715976331361No Hit
GGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTT10.591715976331361No Hit
GCCGGGGCTCCTGGTACGGGGGTGGCTCTCTAGGACCTGGGCGGTTGTTG10.591715976331361No Hit
CATGGAGCGTGTGAAGGTGGGCCCAGGGCTGACTCTCTGTGCCAAGGGCT10.591715976331361No Hit
ACATGGTTGGCAGCAGGGCCATAATAATCTGTATCCAAGGCCTCTCATCC10.591715976331361No Hit
GAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCG10.591715976331361No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
AGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACAC10.591715976331361No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
ATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAG10.591715976331361No Hit
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGT10.591715976331361No Hit
GCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGC10.591715976331361No Hit
GTGAACAATCTGAAAAGGGAATTAAGAAAATCTCATTTCCAATAGTGTCA10.591715976331361No Hit
TGTGAGTACCGGTATAGGGGGGAAAACCCTGCTTGCTGTTTGTAAAGTAA10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAG10.591715976331361No Hit
CTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAG10.591715976331361No Hit
GGTCCAAGTAAACCGCTAGCTTGTTGCACCGTGGAGGCCACAGGAGCAGA10.591715976331361No Hit
TCCTGTATGTTTTATTCCAGAGGCATTGCATGGTGATAATAAAATGATAG10.591715976331361No Hit
ATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGGGAAAG10.591715976331361No Hit
TGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTC10.591715976331361No Hit
GTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGCTCACTCAGGGC10.591715976331361No Hit
TCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCA10.591715976331361No Hit
GGCCCAGGGAGGTTCCAGTGACAAATTAGTGGTTGTGTCCCAGTGGGACA10.591715976331361No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTATTTTTTTTTTTTTTAATAAGAC10.591715976331361No Hit
CAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCC10.591715976331361No Hit
CACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTG10.591715976331361No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG10.591715976331361No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.591715976331361Clontech Universal Primer Mix Long (96% over 26bp)
CACGCGCACTTCGGCCAGCTTCAGGCCGTTGGACTCGGAGCCGATGACTG10.591715976331361No Hit
CAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA10.591715976331361No Hit
CTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAAC10.591715976331361No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.591715976331361No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTATGCGGTGT10.591715976331361No Hit
CCGGAATGCGGCGCCCGAATCTGACGTTCGAAAGGTGACGAGCCAAGTCG10.591715976331361No Hit
ACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT10.591715976331361No Hit
ATCTTTTTTCTTCTAAAAGTATGTTTTTATCTTCTAATTTCCCTATCTTC10.591715976331361No Hit
GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC10.591715976331361No Hit
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAG10.591715976331361No Hit
ATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTA10.591715976331361No Hit
CCAAGTACACTTGCTCTTTCTGTGGCAAAACCAAGATGAAGAGACGAGCT10.591715976331361No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAT10.591715976331361No Hit
CGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCC10.591715976331361No Hit
ATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCTTTGAA10.591715976331361No Hit
GTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCAC10.591715976331361No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA10.591715976331361No Hit
TCTCCGTGTGTTTCTGGCTCATGTGGAGACCCATGAGCAGGGCTCCCACA10.591715976331361No Hit
GGGCTGGACATGGTCCCACACACCCCGAGGGCCTGGCAGGTGGTGTGGGC10.591715976331361No Hit
GTATCAACGCAGAGTACATGGGAACTGTGGTAATTCTAGAGCTAATACAT10.591715976331361No Hit
GAAATGCAGGCCATATGTGCGCATGACCGAGATTTTGAAAAAAGATGTAC10.591715976331361No Hit
CTCAAAAACTGTTTATTATACAAGTGAGTTTTGAGTCACGATGGGCTTAT10.591715976331361No Hit
CTTCCGGATGAGCAGCTCGGTCGACTTCTGATAACGACGAATCTCTCGAA10.591715976331361No Hit
ACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG10.591715976331361No Hit

[FAIL]Adapter Content

Adapter graph