FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003644556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTTCATCTGGGTCCTGCTCAGCTAGGGTGACCTTCAGGTGGCAGGTGA513.513513513513514No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG25.405405405405405No Hit
GTCTTATCCCAGAAACAGAAGCCAGGCCTACTCTAGAATAATTTAATATT25.405405405405405No Hit
CCCCGTACTCGTGGCCAGCAGTTCCTCTTTGCCTTATATTTGTGGTACGC25.405405405405405No Hit
GTCTTAGTGAAGAAGGCCTGGTGGTCTCGTTTACAAAAATGGCCAGTGTC25.405405405405405No Hit
ACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTT12.7027027027027026No Hit
CTGTTTCACCAGTTCTGGAGGAATTGTTGAACAGCTTACAGCACTGCCTG12.7027027027027026No Hit
ATCATTTGCAGTCTCACTGTGAAGGCAAAAAAAAAAACAAAAACCAAAAC12.7027027027027026No Hit
ATAAAAACCCTATGTTGTAGCCACAGCTGGAGCCTGAGTCCGCTGCACGG12.7027027027027026No Hit
GCCTTGTAACAAAGGCAGGTTGGCATAGGGCCCTGGAGCCTGACTGCCCA12.7027027027027026No Hit
GTCTGAGGAAGTTTGCTGCGGTTTCGCCTTGACCGCGGGAAGGAGACATA12.7027027027027026No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA12.7027027027027026No Hit
GGAGGGCCCCCAGGGTGACCTGTTGACCAAAACACAGGAGCTGGGCCGTG12.7027027027027026No Hit
CCTTTCTCCGCTTGGGTTCCTGGAACGTGGTGATGTTCGTCACCTATGAG12.7027027027027026No Hit
TCTCTGAGCGTTTCCCAGAGGATGGACCCGAGTTGGAGGAGATCCTCACA12.7027027027027026No Hit
GATGTATGCCCCATAGTGCTCGGTGGAGTCTCTCTTAGCATAGTGTCCGC12.7027027027027026No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTT12.7027027027027026No Hit
ACGCAGAGTACATGGGGACTGCGCAGGTAGAAAATTATGGCATGCCGTTT12.7027027027027026No Hit
GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATT12.7027027027027026No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA12.7027027027027026No Hit
TGGCCAGAGTGTCACAGGCAAAAGGCATCGGGAAGCAGGAGCATCTTCTT12.7027027027027026No Hit
CCGCGGTGCCGCATGAGGTACGCGGTGCAGACGGCGGCCGAGCGGCTGCG12.7027027027027026No Hit
GTCCCGGATCACCGAACATTTCTGGCCCCCAAGTGTCAGCCCATTCACGT12.7027027027027026No Hit
GTACATGGGATATAACTAGGAAACGGCAAGGTCTAGCCTGCAATATCGCC12.7027027027027026No Hit
TTCCTTCACCAACATGCAAGTTCTTTCCTTCCCTGCCAGCCAGATAGATA12.7027027027027026No Hit
GTATCAACGCAGAGTACATGGGGGGCGCCGCCACAGTAGCTGTAACTGCC12.7027027027027026No Hit
CTGTATCACCAGTTCTGGAGGAATTGTTGAACAGCTTACAGCACTGCCTG12.7027027027027026No Hit
GACTTTGCATGTGCAAACGCCTTCAACAACAGCATTATTCCAGAAGACAC12.7027027027027026No Hit
GGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCC12.7027027027027026No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)