FastQCFastQC Report
Tue 10 May 2022
EGAF00003644577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40051
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1340.3345734188909141No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT850.2122294075054306No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT480.1198471948265961No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG480.1198471948265961No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA480.1198471948265961No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT450.11235674514993384No Hit
GTACATGGGCACTGCATCCTGCTGACGCGCGACACCGCCTCGGGCAACTG430.107363112032159No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT420.10486629547327157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)