FastQCFastQC Report
Tue 10 May 2022
EGAF00003644578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40051
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1220.304611620184265No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1020.2546752890065167No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA560.13982172729769543No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA530.13233127762103317No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT510.12733764450325835No Hit
TCTCCATGTAGAGCCGCTTGTCCCCGCGGCCGAAGTTGACGACGGCGGCC500.12484082794437092No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT470.11735037826770868No Hit
GTACATGGGCACTGCATCCTGCTGACGCGCGACACCGCCTCGGGCAACTG440.10985992859104642No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG430.107363112032159No Hit
GTACATGGGCGCGCCATGTCGCCGCGCGTGTGATGGCTCTTGAGGCCGAC420.10486629547327157No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT420.10486629547327157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)