FastQCFastQC Report
Tue 10 May 2022
EGAF00003644625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429331
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGGACAGTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCC7490.17445746987755367No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA5870.13672434555156743No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA5210.121351591196536No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT5150.11995406807335132No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT4990.11622733974485887No Hit
GTAGTAGGTGCTCAAAACATCACAGCCCGGATTGGCGAGCCACTGGTGCT4960.11552857818326653No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA4860.11319937297795872No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA4850.11296645245742795No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT4800.11180184985477405No Hit
GTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCCGGCTGTCGGG4640.10807512152628158No Hit
GTCTCAGGGTGTCTCCTGGTCTGTTCCTTCACAGATACTCCCTTCTCATT4440.103416711115666No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC4350.10132042643088898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)