FastQCFastQC Report
Tue 10 May 2022
EGAF00003644626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429331
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGGACAGTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCC6500.15139833834500654No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA5800.13509390190785198No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA5410.1260100016071516No Hit
GTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCCGGCTGTCGGG5140.11972114755282054No Hit
GTAGTAGGTGCTCAAAACATCACAGCCCGGATTGGCGAGCCACTGGTGCT4800.11180184985477405No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT4660.10854096256734315No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA4650.10830804204681235No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT4410.10271794955407368No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT4410.10271794955407368No Hit
CTCCAGTACTACTCTCGCCTGCCTCAGGTTCCTCCGACTGATTCAGTTCT4310.10038874434876587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)