FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003644676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29
Sequences flagged as poor quality0
Sequence length140
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGCCGTGGCTGCCTGAGCACTGAGTACACGTCGTCCACACGGCTGA26.896551724137931No Hit
CAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCCGGTACAG26.896551724137931No Hit
CTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGA26.896551724137931No Hit
GGCACCATGAGTTCAGAATTCTGCTTGGAGCCCTTATATCCATTCACCTG26.896551724137931No Hit
TTCCAAATTCTGCTTGCTTGCTTTTTAATATTGATATGCTTATACACTTA26.896551724137931No Hit
CGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGA13.4482758620689653No Hit
GGTTGTTCCATTCCATTCCATTCCACTCCATTCCATTGCACTCGGGTTGA13.4482758620689653No Hit
GCATGTAGGCGAGGGCGTCGCTGTAGCTCTCTTCGTCCTCGACGACGAGT13.4482758620689653No Hit
ACACACAAGAGCACCAAAGCAGCTCATCCCACTGATGACACCACGACGCT13.4482758620689653No Hit
GGTGACACAGTAGAATGGTTAAGAAGGAAGGTTTGTTGGCTTCAATTCCC13.4482758620689653No Hit
CTCCTACCTTTCTGATGCACCATTCTTAGTACATGCATTTCATCCTCATG13.4482758620689653No Hit
CCGTTGCAGAGGAGCGAGCTGGACGCCACTGTGGGGCTCTGAGAGTCCTG13.4482758620689653No Hit
GGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCG13.4482758620689653No Hit
AACTTCATCCCTAGCTCGCGAAGCATGTGGCAGGCCTCGACGGTGTGGTC13.4482758620689653No Hit
GATACGGGCAGGATGCTTTGGGGCAGTGCTTACCACACTGGAGAAGCTTC13.4482758620689653No Hit
CCCTCATCCATTGCTCACTAGCCATGCTTTGAATTTGGGAGCCTTACAAT13.4482758620689653No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG13.4482758620689653No Hit
GTACAATGATAGAGAATAACAGGAGGGGACTACTTCAGAAAAAGAAGACA13.4482758620689653No Hit
GTATGGCGGTCAACGCGGTTTTGCTGCTCCGGCGGGGCGTTTAAGTCTAC13.4482758620689653No Hit
CGCTGACCCTGACCGCATTCGCCAAGTTTTGATTAATCTTCTTGATAACG13.4482758620689653No Hit
GGATGGAAGGTCTTGCCAAGATGTGAACGAGTGTGCCACCGAGAACCCCT13.4482758620689653No Hit
CAGTGGTATCAACGCAAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT13.4482758620689653No Hit
GCCTGTAATCCCAGCATTTTCTAGGAGGCATCTGTTGCAGTGTCTGCTAC13.4482758620689653No Hit
GGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTC13.4482758620689653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)