FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003644734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length140
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTCATGAAGGCAATTTATTAACAGAAAATATTTTGAGGAATCTTGTT211.11111111111111No Hit
CTCTTGTTCAGGTCGCGCCCGTTGAAGAAGTCCTGCAGCAGCTTCTGCAC211.11111111111111No Hit
TGCTGGGCCAGTCCGTGGGGTTGGCGGGCCATCCCAACAGGTGATGACCC211.11111111111111No Hit
CCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGC211.11111111111111No Hit
GTGTATTGACAGTAGTCAACAGGAAACCAACCAGAAATCTTCTTGGATAA15.555555555555555No Hit
AGGGTGGGCTGTCTCTCCACCTCCTCTCATGATGCTAACAGGGACGCAGA15.555555555555555No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTAAAAAAAA15.555555555555555No Hit
CACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGA15.555555555555555No Hit
AAATATTAGTCTTATGGTTCTTATAAAGATTTAGTTTAAAAAGAGAATTT15.555555555555555No Hit
CCCCAGTTTCTCTTCAGGGATGGATAGTGACCTGTCTTCATTTTGCACAG15.555555555555555No Hit
ATTGGGCAGCGTTCATGTATGTATCGTAACTTGGTTCCTGGGAGAACATG15.555555555555555No Hit
CAACCATCGTAAGCTTTCTAACAATTTGCTTAGCTTCCGCAATTTCTCGT15.555555555555555No Hit
GGCCCGAGCCGCCTCGCTCCCGCAGCTACGAATAATGGACTAGCACCGCG15.555555555555555No Hit
TTCCATCATAGCTCCCAACAGCCAGGAACTGACTGCTGGGGCTCCAGTCC15.555555555555555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)