FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003644819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length140
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCCCCAAGACGCAATGAGCCCGAACCCGACGTGAAAAACCGATACGCG212.5No Hit
CTTTGGGGGAGGGCGACAGTTCCGGGGAGGACGCTAGGATCCCGAAAATG16.25No Hit
GTTAAGAACTAGTGCATTGCCAAGGCTGTTTGTTTTTGGGTCCTCAAGGG16.25No Hit
GTTTAAGGGACACGAGAACGACTATGACGTTATTGCTGTCTCTTATACAC16.25No Hit
TAATTAAAGCTCGAAAATTTTCTTATAGAAATCAACATTCATTAATTCCC16.25No Hit
TCGGTGGCATTGGGGTTGCCGGTCTCCTCGTTGATCTCGTCGGTGTAGTA16.25No Hit
TCATTGCGTCCCGGTCGGCGTGGGTCAGCAGGCCGCTGTCGCCGGGGGTC16.25No Hit
TTATAAAACAGACCCACCGTTTCCACACGGTTTCCGTCCGACAGTTCAAA16.25No Hit
TGCCAGGGCCGCGGCTGGGACTCGAAGCACCAGCCAGCAGCTCTGACATT16.25No Hit
TTCCAAGCATGGCCAAGTGTTGGGGGGGGCCGAAATGCCAAAAAAACAAA16.25No Hit
GCGCGTGGGATGGCGTTGCTTGTTTGCGGAGCGGTCCTGTTGGGGATCGG16.25No Hit
GTTTGTGACGCGGTTCCGCGCTGCAAATTACTCGAACAACACCTTCGCGG16.25No Hit
ACATTACGCCGGCGGACGGCAATATTTTCGCCGATCTCGGCGTTGCTGCC16.25No Hit
CCTTCACCCTACATCAAACCATGGAAAAGAGCTCACCAGAGATAGTGGGT16.25No Hit
TGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCC16.25No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)