FastQCFastQC Report
Fri 10 May 2024
EGAF00003644960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Total Bases1.4 kbp
Sequences flagged as poor quality0
Sequence length140
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCTGGGTGATGGTGTGCCTTACCTGATTTTATCCTTTATACTTCTTTG220.0No Hit
GATTATAACAACGGTGCAATCTCAGCTAAACCGACGCAGTTTTGCTCCTT220.0No Hit
GGAGGAAATAGAGGTTCCAAGAACCTTTCCTCATGAAACTCCCCCAACTC110.0No Hit
GTAGGAAGAGGCAGATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAG110.0No Hit
ATATATAGGAAAAGGGAAGGTAGAAGAGCTGAAGGCACTCGTGGAAGAGC110.0No Hit
GACCACGAGGAAGAGGAAGACTGACAGGTGACAGGAAAGGACAGGACACC110.0No Hit
GTTGAGAAGTGCATGTGTTAGTCTGTTCATGCACTGCTATAAAGAATTAC110.0No Hit
CATTGGGGGCCTGATGGCCCGGCCAGAATACAGAGAGTGGAATCCGGAGC110.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)