FastQCFastQC Report
Tue 10 May 2022
EGAF00003644966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003644966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences263619
Sequences flagged as poor quality0
Sequence length140
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTT3820.14490609553939587No Hit
ATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGCCTTTTCATCAA2900.11000724530477697No Hit
CACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCAC2860.10848990399022831No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC2840.107731233332954No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG2720.10317920938930805No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT2720.10317920938930805No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG2720.10317920938930805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)