FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41
Sequences flagged as poor quality0
Sequence length140
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGCACTTTGGGAGGCCAAGGTGGAAGGATGGCTTCAGGCAAGGAGT37.317073170731707No Hit
GCGTCGACCTGCGCGAAGCTGACCTCGGGGTTGTTCTTGGTCGCGTCGAT24.878048780487805No Hit
CGGCTGCTCTGCTCTCTTCCCATGTCCTTGATCCTCCTGATGAACGAAGC24.878048780487805No Hit
AACGTGGATACCCCCGAGCGTGCGGCCAGGTGTCTGGCGCTGGGCGCGCA24.878048780487805No Hit
GGGCGGCATAGCCGGCGATGATCATGCGGCCCTTGGCGAGCCGTGCCCCG24.878048780487805No Hit
GGTGCTGGTAGCCGCCGATTCGGCCGGCCGCCGTGAAGCCTTGATGGAAG24.878048780487805No Hit
GCGTAGAAGGCGTCGCGCCCCCCGTCGGCGATGGCCCGCAGCGTCCGGGC24.878048780487805No Hit
GAACTAACACTACCTGAGCTGAGTACCTCAACAAAAGGCAGAGGGCCATG24.878048780487805No Hit
GACCATGGTCGCGACGACCGACCCGGCCGGCGCCGTCGCGCTCGATGCCG24.878048780487805No Hit
CATCCCTTGCAGGTGGGAAAGGATCTGCATATGGCAGCCTTTTTTTTTTT12.4390243902439024No Hit
CCGCGTTGGGGAGCGTCCGGTCCCGGGCCGATTCCCAGCCATGGACGAGG12.4390243902439024No Hit
TGGCATCTCGAGCGCCTGTACGACTGACGTAGCTCAGGCTCGTCAGCGAA12.4390243902439024No Hit
GGGAACAGCTGGCCGTCGCCCTCCAGCTCCTCCAGCCGGTACTCGGTGCG12.4390243902439024No Hit
GTCGAGGCTCGCGACATTGTCAACTGGGCGAACCCGGATTACTACTGGCG12.4390243902439024No Hit
GGGCGACGTAGCCGCGGAAGAGGATGCTGTTGAACCACGGGTCGACGGGC12.4390243902439024No Hit
GCATCGTTGTCACCACCGTTATTGCCGTCATCGTGGAAGCGATCGCGGGG12.4390243902439024No Hit
GCAGCGCTCGGCCGACGCCGATCAGCCCGTGGTGGTCGAGGAAGCGCAGG12.4390243902439024No Hit
GGCTGAGAGGTCTTAGAGCGGTCCAACGTTTTAAGAATCATGGCCTTTAG12.4390243902439024No Hit
GAAATCAGGCAGAGGGGACTTTTCCCTCCACTGAGCTGTTGGAGTTGCTG12.4390243902439024No Hit
GCCATGACCGGGACGACCATCTCCAGGTACTTGGCGAACGAGTTGGGCCC12.4390243902439024No Hit
CTCCCGGAGGATCCGCGCGCCGTCCACGAGCTCCGCCGTCTTGTCCCGCG12.4390243902439024No Hit
GGTCACCGGTTTGGATTGTTCGCGCATAAAGCGTGACACGCCGGTGATAG12.4390243902439024No Hit
CTCGGAACAGCGCGTTTCGCGCCTTTGCCATACACGCTTTCGTCGGAGCT12.4390243902439024No Hit
ACGGTTACGCATGCAGCGGTAGCAGCCCAAGTCCATCAGACGCTTGATGT12.4390243902439024No Hit
GTATGTCACCAGCGCGGTATTTATGATTATGAGCGCGTGCTTTTTATATC12.4390243902439024No Hit
TCCGGCAGCACCGGGTGATCCTATCGGTATCGTTCAAACTCGGCAAGGGC12.4390243902439024No Hit
ACTTCTATGAAACCTTCGACGGCGACGCCGAGGTGCTGCACCGCACCCTC12.4390243902439024No Hit
GACCTCATCGGCCGCGCAGAGGGCGAAGATGTCGGTCAGGGCCTCGTCGA12.4390243902439024No Hit
TCGTGAACCTGATCGGTGCCGACATCTGCGACAACTGCGGTGCGGACATC12.4390243902439024No Hit
AGGCCGAGCCAGTCGCCAGCCAGCCACCGGGTGCGCACCCCGTCATCCGC12.4390243902439024No Hit
CTCCCGGAGGATCCGCGCGCCGGCCACGAGCGCCGCCGTCTTGTCCCGCG12.4390243902439024No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)