FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41
Sequences flagged as poor quality0
Sequence length140
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAACCTCAAACTCTTGGGCTCAAGTGATCTTCCTGCCTCAGCCTCCT37.317073170731707No Hit
CGACGAGTGGAGCGTCACCGGCGGGACCGAGCCGCCAGCCGGCGGCACCG24.878048780487805No Hit
CACCGCGTGTGTCGCATTCGACACCGGCGGTCTCGGCGACAAGGGCTTCA24.878048780487805No Hit
CGTGCGGCGCGGTTGGTTGGCCCGCTCCGGGAACAACTGGCGCTCGGTCA24.878048780487805No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24.878048780487805No Hit
AAGTCCCTGGCCGAGGTGATGGCCCCGGCCATCCGCTACGCCGAGGAGGG24.878048780487805No Hit
GGAGCGGCATCACTCCCGGGTGCCGGCGGAGCTCATCGGTCTGCTGCGCG24.878048780487805No Hit
CTGTAAACGAATGAAAATAGCGGGAACGCCGGTAAAGTAACCCTCGCCTT24.878048780487805No Hit
GCTGTGGACAGCTGCGTTCGTCGGGTTCGTGCTGCGCGTTGGTGTCGTGC24.878048780487805No Hit
ATCGCCGCCCGGCCGCTCCCTCGAGCCGCCACGAACGCGTCCGACGGGTC24.878048780487805No Hit
GGTCGAAGGCGGCGGTGGCGACCCGCGACGCCGCGTACCACGACGAGGCG12.4390243902439024No Hit
TTGGCGGATGTTCGCGGACATCCTGCGGTTCTACCGCGACGCGCGCTCGC12.4390243902439024No Hit
CCATCAGCATCAACAGACGGCCCAACCCCCGCGATCGCTTCCACGATGAC12.4390243902439024No Hit
CAGGAACGCCGTGCGGCGATGCGTGCTTATGGTGCGGAACTGATTCTTGT12.4390243902439024No Hit
GCCGCGAACTGTCCATGAACATCAAGCGTCTGATGGACTTGGGCTGCTAC12.4390243902439024No Hit
ACTAAAGGCCATGATTCTTAAAACGTTGGACCGCTCTAAGACCTCTCAGC12.4390243902439024No Hit
GGTTCATCCCGGCGCGGGACGGTGCGCCCGCACCGGGGATCGTCCTCGTC12.4390243902439024No Hit
AAACAGAAGGGGCCTAAGGCAGATGGCCAGGGACCTCCCACGTGGCCAGA12.4390243902439024No Hit
GGATATTGCGGTCGAGAGCGAGGTGTTTAAAGAATGGGTGGAGAACGACG12.4390243902439024No Hit
ACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG12.4390243902439024No Hit
TCTTCGACCCGATGGCGGCCAGCACCAACGCGACGACGGTCTTCTCGGGG12.4390243902439024No Hit
GTTTGAGGACGGTCACTTCGACCTCCTCACCTTGGTCAGATCGAAACTCA12.4390243902439024No Hit
ACGTAATCAGCGTATGTATTCAAGTGATATAAAAAGCACGCGCTCATAAT12.4390243902439024No Hit
CCCGGGCTCGATGCCCGCCGACGACGCGTCGGGCGAGCCGGCGAGCGCCC12.4390243902439024No Hit
CCGATCGACCCGGAGCGCCTGGAGGCGTTCCCGTTCGTCCAGTACGACAT12.4390243902439024No Hit
CCGCGTGACGTCGCGCTCGACGAGGCCGCGCTTCGGCACGTCGCCGACCT12.4390243902439024No Hit
ACCCAGGCGATCCGGACCCGGGCGGAGGTCTGGCGCGTCGTCGGGGTGAT12.4390243902439024No Hit
CGACCGGGTCGGGTGTCATGAAGTCGCGGACATGGAACGAGTCGAGACGC12.4390243902439024No Hit
GAACAGCGCCGCCGACATCGCCGCCCTGGTCGGCGCGCTCGGCGTGCCGC12.4390243902439024No Hit
ACCGATACCAAGATGCGATCGGGGCCGACGGCGGTCTGGACGTCGCGGCG12.4390243902439024No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)