FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGGAAGGATGAGGAGAAGATGGAACTGCAGGAGATGCAGCTGA31.6042780748663104No Hit
GCTTAAGTTCATAAGGGACTTTTAAGTACCCATTTGTAGTTAGCAGATTT31.6042780748663104No Hit
GGTTGAATTCTTGCAGTCGTAGTTAATAAAATATCAATGTCGGAACGTGT31.6042780748663104No Hit
CCCATATCCACATGTTGCTAGAGGGGCTTAGAGAACTACAAGGCCTGCAG31.6042780748663104No Hit
GTTTATTCTCTGGTGGAGTAAAGGGTGAGTGCCCTGGGTAGGAGAATCCA21.06951871657754No Hit
ACTCAAGCTACAGCAGCAGCACTTCCCAAGCCTGCTGACCACAGTCACAT21.06951871657754No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAG21.06951871657754No Hit
GGCCAGCTCACGAGGCGGTGCATCAGCGCGTAGAAGATGTGGTTGCACAC21.06951871657754No Hit
ACTTTGAGCACTTTCTGCCCATGCTGCAGACAGTGGCCAAGAACAAGGAC21.06951871657754No Hit
GTGGTGTATCAGACGCAAGCCACGCGTCGCATCCTCATGTTGAACACAGG21.06951871657754No Hit
CCCCCAAGACTTCAGATACAAAAAGAAAAAAAGAAAGAAAGAGAAAGAGA21.06951871657754No Hit
GAAGGAGATTGAGCGTCTGCAGAAAGAAATTGAGCGCCATAAGCAGAAGA21.06951871657754No Hit
GTGTGGGTCCACTTACATGTGGATTTTCTTCCGCCTCTGCCATCCCTGAG21.06951871657754No Hit
CAGAGCTGAGCTTTTGAGCAGACTCTGAGAAGTATCATTGCTTGTGTTGA21.06951871657754No Hit
CCGACGGGGCGGCCGAGCCAGCTTGCTCACACTCTCGCATGACCTGGTAG21.06951871657754No Hit
TCGTGTGCCTGGTGAGATGGCATTCAGGAAACAGGATTTCAAAATCCCGG21.06951871657754No Hit
CCTTCACCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGTTT21.06951871657754No Hit
TCCCATAACAACTAGACACAAGCATTCTCAGAAACTTGTTTGTGATGTGT21.06951871657754No Hit
GTCGGGGTTATCACTGAGGCGCCTCGGGTGCCTCGGGCTTGTCGGGAGTG21.06951871657754No Hit
GATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGTAAAAAAAAAAA21.06951871657754No Hit
TCCCAGCACTTTGGAAGGCTGAGGCGGGCAGATCACGAGGTCTGGGGATA21.06951871657754No Hit
GTCCTGAAGGTGACAGCTAGGCCTCACCTGTCCCCATATCTATGTAGGAT21.06951871657754No Hit
GGTCTACACTGACTTCAGTCGTAACTGGTTCCAGCATCCCTCAACCCAGT21.06951871657754No Hit
TTGATGTGCTGCTGGATTCATTTTGCCAGTATTTTATTGAGGATTTTCGC21.06951871657754No Hit
GAACTGGCTTAGATTCATTCATACAGATACTTACCCAGACACTAGGCCTC10.53475935828877No Hit
ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATC10.53475935828877No Hit
ACTCCGCCGCGATGGTGACCCGGTTCCTGGGCCCACGCTACCGGGAGCTG10.53475935828877No Hit
GGCGGGACAAATTGCCGCGAGTTCAGTGCCGCCACTGGAACCAGGAGATG10.53475935828877No Hit
GCTGAGGAGCTGGTACGAGAAGAACAAGCACATCTTTCCCGCCAGCCGCT10.53475935828877No Hit
CAGTTATGTTAACTTTATTAATAGGCTGCAGTCTCAAAAATCTTTCTTTT10.53475935828877No Hit
TCTCTTTTCAGTTTATTGCATGAAGGAGTTACACTAGTCCAAGTTAAAAG10.53475935828877No Hit
GTAGTGTCTAAGGCACTTTCCGTAATGTCAGTTTGCTTAACTACCAACCA10.53475935828877No Hit
TATCAACGCAGAGTACATGGGTCCTGTGGGCTGCACAGCTCACCTTGTTC10.53475935828877No Hit
GGAGGAGTGGGTGGCCCCGATGCCGGGCCGGCCATGCTTTACGGGCTTGT10.53475935828877No Hit
TTTTATCATGGGATATCAGATTTTCACTATAGGCCTCAATGGATTCTGAT10.53475935828877No Hit
GCCCCGGAGGACGTGATGTGAGACCCGCTTGTGAGTCCTCCACACTCGTT10.53475935828877No Hit
GGCCTGGGCCCCGGTCACGTCGCCAACCATCTTCCTGTCCCTAGACTTCA10.53475935828877No Hit
GGTATCAACGCAGAGTACATGGGATGGATAAGGTGGGAAAAACTGGAGCA10.53475935828877No Hit
TTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGGCGCCCAACCAACT10.53475935828877No Hit
TTTTTTCACTGACCCGGTGAGGCGGGGGGGCGAGCCCCGAGGGGCTCTCG10.53475935828877No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT10.53475935828877No Hit
ACCAAGATTGTGCCACTGCATGCCATCCTGGGCAATCTCAAAACATAACA10.53475935828877No Hit
GGGCTGGTTTCTCGGAAGTTGAGGGCAGAGTAGGTCTGGATGGGGAGATT10.53475935828877No Hit
GTGCGTGATGCGCAGGGTCTGGTCGGGCGCGGCGGCATCATCGCCTGCCG10.53475935828877No Hit
GAATGGCACCTGATTTTGTGTTAAATTTTAGTTCCCTGTTGTTTAATGCC10.53475935828877No Hit
GTACATGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGC10.53475935828877No Hit
ATCCTGAGGGTGCGACTCCGCCGCGATGGTGACCCGGTTCCTGGGCCCAC10.53475935828877No Hit
CTGGAGAGCAGTGGCTCGATCTTGGTTCACTGAAACCTCCGCCTCCCGGG10.53475935828877No Hit
CATCTGGGAGATTCGTCACTACACTGCGTTGCGTACCCTTCGGGAAGGCT10.53475935828877No Hit
GTCCAGGGCCAGAGCATACCACGTCTGCAGTGCCTGTGAGCAGAGCCAGC10.53475935828877No Hit
CCGACAGCGACACCGACAGGCGAAGTCCGCCCCGTGATCGTCGGCGCAGG10.53475935828877No Hit
GTACATGGGAGTCCCGCTCCGTCCTCCTCGCCTGCCACCGGTGCACCCAG10.53475935828877No Hit
TCCCTGCGCCCGCCGCCAGTCCCGCCGCTTCTCCCGTCGTTTCGTCCATT10.53475935828877No Hit
GTACATGGGAGTCTCGCGCCTGCAGCCCGTGCCGCCCCAGCCGCTGCCGC10.53475935828877No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT10.53475935828877No Hit
CCGTGAAACTGCTTGCGCGCACCCGCACGGACAGTTTGCTCAACGGGGGA10.53475935828877No Hit
ACTGAGGACGCTGCAGGAATTCATGTTTAATTTAATGCAGATACATATGG10.53475935828877No Hit
GGCTTCATAGCATTCGCCTACTCCGTGAAGTCTAGGGACAGGAAGATGGT10.53475935828877No Hit
TATCAACGCAGAGTACATGGGGACTGTGGAGGGCGAGCTGAGCCCTGGCC10.53475935828877No Hit
GCAGAAGACGGCATACGAGATCTTGCTTCGTGACTGGAGTTCAGACGTGT10.53475935828877Illumina PCR Primer Index 1 (96% over 25bp)
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA10.53475935828877No Hit
GGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGC10.53475935828877No Hit
CTGATTAAGTATGGCGATCGCAATCGATTTTGGTACGAGTAACACTTGTA10.53475935828877No Hit
CCGCAGTCAAAACCGCGCAATTATCCCCGTCCTGATTTACTGGACTCGCA10.53475935828877No Hit
TTCCCTTAGATTCCATTCGATGATTCCACTTGATTCCATTTACGATGATT10.53475935828877No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT10.53475935828877No Hit
GCCCAGTTCTTGCCATTCATCTCTTGCCCACTGGCCTTGGGGTCACCATG10.53475935828877No Hit
GGCTCCGCTCTGCCGCCGGCGCGGCTCAAGGGCAGAGTCGGCCGGTCGGG10.53475935828877No Hit
GTCTTGAAGTCAGATCAGACAGTGTCAGTGCTGTAATGCTGCTCTTCTCC10.53475935828877No Hit
GTACTGTGGCGCTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTT10.53475935828877No Hit
ACGCAGAGTACATGGGGCTTTCCAACTTGGACGCTGCAGAATGGCTCCCG10.53475935828877No Hit
CAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTTATACCAACCCA10.53475935828877No Hit
CTTCTGGCCCATTTTTTCTAAGAAAATACATAAAAACTTTAGGATTTCTT10.53475935828877No Hit
CAGTTTGTAAAGTTGGAGCTTTTGGCTTAAAACACGAGACAGAACTTTAC10.53475935828877No Hit
GGCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGGCGGAGATGG10.53475935828877No Hit
GTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGACCAGGCCT10.53475935828877No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAA10.53475935828877No Hit
GCTTTGGCTAGGAATGATTTGGAAAAGAACTGAAGGCATAATTCCACAGG10.53475935828877No Hit
CTGCAGCTACGCTACCAGGAGATCTCCAAGCGAACTCAGCCTCCTCCCAA10.53475935828877No Hit
ATGCATGGTACCCCTCGCCGCAGCTCGGCGAGGCTCCTGCTGACCCCGCC10.53475935828877No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.53475935828877Clontech Universal Primer Mix Long (96% over 26bp)
ATGGGGAGCATCGCTGGCTGACAGGCTGGTCAGAAAATGTGATGTTCTGA10.53475935828877No Hit
CCCAGTAGCAGCGCCATGGCCGGGTGGAACGCCTACATCGACAACCTCAT10.53475935828877No Hit
GTGGAGGGGTGTACTTTCCTTCCTTTATCAGCTTATCCCGCTGCTTCCTG10.53475935828877No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGAG10.53475935828877No Hit
CAAGTACGCCAAGAACAACGCCCAGTACCGCAAGGACTGGCTGGACCGCA10.53475935828877No Hit
ACACGCAACTGATCTCGCCAAGGGTGCATCGAGACGCAAGGCATGATTTG10.53475935828877No Hit
CCGGGGTGGAGTGCAGTGGCATGATCTCCACTCAGTGCAACCTCCATCTC10.53475935828877No Hit
GGTTCGGGCTGTGACGGGGTGGCCAGCAGGGACGCGCCCCAGGTGGGCAG10.53475935828877No Hit
GTGGAAAGCTGTGTGTTGATTTCATGAATGCGATTTCTGATATGGCGGCG10.53475935828877No Hit
CTTTATTAATAGGCTGCAGTCTCAAAAATCTTTCTTTTCATCATCAGATG10.53475935828877No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTT10.53475935828877Clontech SMART CDS Primer II A (100% over 26bp)
AACCTGGAGAGTGCCTTCGAGTGCGAGGCGAGGTGGCTCCTGACGCTAAG10.53475935828877No Hit
TCATAAATTAGGTCACATTCTCCCTGGAGGAAATCCAAGGAGGCAAAGTA10.53475935828877No Hit
GAATTAACCATCACCCCTTTTAGCGACCCCGATCCGTTTCAAGAATTTAC10.53475935828877No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.53475935828877Clontech SMART CDS Primer II A (100% over 21bp)
CATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.53475935828877No Hit
TCACTGGAGTTCTATCATTCATTTATTCAACAAACATTTAGCACCTTGTA10.53475935828877No Hit
CTCTCTTCCAGGACATCAAGAAGCCAGCTGAAGATTAGTGGGGGAAAAAC10.53475935828877No Hit
TGAGAACTGTAACCCTGACTGACACATTGATTTCTGCTTGAGACCCTGAG10.53475935828877No Hit
CAATAAATGTTAGCTGCTATTGTTGTTGTTAAACTATTTAACAAACTACG10.53475935828877No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGAAAAAAAAATTT10.53475935828877No Hit
CAACCTGGATCTGCTCGAGGCCGTGGAGCTGGGCTTCCTGCTCGAGCTCG10.53475935828877No Hit
AAAAATAGGTTAGCTTTAATGGATTAATGTTGTACAATAAATAACATTAC10.53475935828877No Hit
TCTAAAAACCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAA10.53475935828877No Hit
CTGGCCTATCAGAGATACAGAAGGCTTAGATAATAGCTGGACACATTCAG10.53475935828877No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.53475935828877Clontech Universal Primer Mix Long (100% over 23bp)
ATCGTCAACCCGGCATTCGAGCAACTCGTACTGCCGATCGCGGTCGTCAT10.53475935828877No Hit
TCTCTGCACTGACCGTGACTGCAATGTCATCCTGGGCTCGGCGCAGGAGT10.53475935828877No Hit
GGGTTGTTGTAGATCATAGTAATTAATTCAGCTTGGGAAATTGTCACTGA10.53475935828877No Hit
CACCACCACACCTGGCTATTTTGTTTTCTTGTACAAACAGAACCTATGTT10.53475935828877No Hit
GGACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAG10.53475935828877No Hit
GCCGCGGCCACCGAGGTCGCGGACGCCATGAAGGCCACCGGCTGGGAGTT10.53475935828877No Hit
GCCCCAGACCCCAAGCAAGTCCAAATCCCTAAGACACAATCTTATGGGAG10.53475935828877No Hit
CAGAGCTGAGCTTTTGAGCAGACTCTGAGAAGGATCATTGCTTGTGGTGA10.53475935828877No Hit
ATCGTGTATTTCCTGGTGGGCTACGGCGTGGCCTACGGCACGCATTTCTT10.53475935828877No Hit
GTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGC10.53475935828877No Hit
GCCGACGAAAAAAAAGTGTAGATCTCGGTGGTCGCCGTATCCCATGTACT10.53475935828877Illumina RNA PCR Primer (96% over 29bp)
CCTGGAAGGGGACAACAGAAGCACTTTCAGTAAAGCAACGGCAAGCAGCT10.53475935828877No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTT10.53475935828877No Hit
GGACAGACGAGGTCAGTACTGGGAACGCCGAAGGTGGGAGGCCATTTCAT10.53475935828877No Hit
GGTATCAACGCAGAGTACATGGGACGGCGACCACCGCTGTCTCTTATACA10.53475935828877No Hit
AGAAAAAACTGTCTAGAATTGCCTGACATTTAAAATCCACTTAAAGCAGA10.53475935828877No Hit
CCTCAGGTGATCCACCCACCTCGGTCTCCCAAAGTGCTGGGATTACAAGT10.53475935828877No Hit
GCCTGAACCTCGGCGCCGACGACTTCCTCACCAAGCCCTTCGAGCTGGAG10.53475935828877No Hit
GCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAA10.53475935828877No Hit
ATACTTGAGACATTGCACCTACCCCGGAAGGCTGGAAATACGGAAACAGC10.53475935828877No Hit
GTTTGTAACAGATACCTTGTGGTTTTGTACTATAATGCCAACAGGGCATT10.53475935828877No Hit
GTATCAACGCAGAGTACATGGGATACGGCGACCACCGAGACTTTTTTTTT10.53475935828877No Hit
ATCATTAACAGTAGAAACAATAGCCAACACAAAGATGTGTCAATTGGTTC10.53475935828877No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGATACCACCCCA10.53475935828877No Hit
GAAGGAAGTTGGGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACG10.53475935828877No Hit
CTCGAAGATGAACCCTTTGTGGAACACCATGGTCATCGGAGGCTATGCTG10.53475935828877No Hit
CGCAGCCAACCCCTCGAGATCGAAATCGAGCAGGTTGGCCGTGGTCATGG10.53475935828877No Hit
GCCCGAGGAAACCTGACCAAGAACCAGGAAATCAAGTCCAAGACCTACCA10.53475935828877No Hit
ATCCTACCACTCCCAATTAATCTTTCCATTTTCGTCTGCGTTTAGTAAAT10.53475935828877No Hit
TCCCCACACTCTGTTGGTCAGAAGTCACTGCTTGGCGCCCTGCTACCTTT10.53475935828877No Hit
GTAAAAGGTCACTTTTATTTGCCTGTCTGAATTGGCTTCACATCACACAC10.53475935828877No Hit
AGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATC10.53475935828877No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAAACCAGCC10.53475935828877No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGGTAGGAATTT10.53475935828877No Hit
CAGTTAAAATATCATCCAGAACATTAAGTTCTCCATCTTTCTCCTCCCGA10.53475935828877No Hit
CTGCATCGAGCTCGCGGCCGAGGGCGCGCGCGTCATCGTCAACGACCTGT10.53475935828877No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA10.53475935828877No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTGGGAACGGGT10.53475935828877No Hit
TTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTA10.53475935828877No Hit
TTTCTTGACCTCGTGTTCTGCCCGCCTCTACCTCCCAAAGTGCCGGGATT10.53475935828877No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTCTTGTGCCAGGTGAGTTGGCAT10.53475935828877No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTGACGCAACACGGGAAACCTCA10.53475935828877No Hit
GCCCTAAGCTATGAGATCAGAAGAGGTATCCCCACATTGCTGCAAAAACC10.53475935828877No Hit
AGCAGTGGTATCAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACT10.53475935828877No Hit
ATGTCCGACAGCGAGAAGCTCAACCTGGACTCGATCATCGGGCGCCTGCT10.53475935828877No Hit
GGAATCCACCTGCACATGGCATCTTAGCTGTGAAGGAGAAAGCAGTGCAC10.53475935828877No Hit
ATAAGGAGAGCAGGTTGCCTACTTTGTCTCAACTTTCTATCTCTACTACC10.53475935828877No Hit
CCTCATGGATGGCTTGGAGGTCAGGTGCCTCGGCCCGGCACGGTGGGCAG10.53475935828877No Hit
TTTTCATACTCGTGGTCCGGTTTGGCCGGAGTCGGCGGTTGCTTCGGGCT10.53475935828877No Hit
GGTATAAAGTGTACCATAAAAGACTTCAGGCCGGGCGCAGTGGCTCACGC10.53475935828877No Hit
GAGGATGCAAAGGCATAAGAATAATACAGTGGACTTTGGGAACGCAGAGG10.53475935828877No Hit
CCATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACC10.53475935828877No Hit

[OK]Adapter Content

Adapter graph