FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTCTAGGTCATCGATGGTTTTCTCCAACTTTGCCACAGACCTCTCGG31.6042780748663104No Hit
ACCGTTATAGGCAATAGTAAAGACCGTGCTAACTAACAAATACAAATGAG31.6042780748663104No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGG31.6042780748663104No Hit
GGATTTAAGTTTCTCTTTAAAAATTGCACTGAAGAAAGGCCGGGCGCGGT31.6042780748663104No Hit
GTACATGGGCAGGTGAGGCTCTCCCTCTTCCTGAGGAGCCAAACAGACAC31.6042780748663104No Hit
AGACCATCCTGGCCAACATGGTGAAACCACGTCTCCACAAAAAAATACAA21.06951871657754No Hit
TTCGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCC21.06951871657754No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA21.06951871657754No Hit
CACTGCAGCAACCCCATCTCTTACGAGACTGGCAGGTGGAGCAGGAGCCT21.06951871657754No Hit
CCTCAAAGCTATGCAAATATCCTCTTGCAGATTCTACAAAAAGAGTGTTT21.06951871657754No Hit
GTTGGTTAGTGTGCAAAATCTCACTTATGGCTAATTCTGGTTCTACATGG21.06951871657754No Hit
GTACATGGGGAGATCTTTTCCAGCAGCTACTGCCTGCCAGAGAGGCGCCT21.06951871657754No Hit
CGAGCTCCGCCCCATGGGCCCGTCACCCCGACAGGATATGCCTCACAAAC21.06951871657754No Hit
AACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA21.06951871657754No Hit
CTCAACAAGGATCAGGCTGCTGGAAACACAGTCACTTGGGAGCTGCTGGG21.06951871657754No Hit
TCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAA21.06951871657754No Hit
CAACTGTAGTAATCATAGTAGCAGCAATCACCCCAGTGAGGCCACTGCTG21.06951871657754No Hit
GCCTCTGGCTGGAAGCTGTTGTCCCCAACTTCAGAAAGTGTCTGCAGATT21.06951871657754No Hit
ACTATTTCAGGGTAAATGGGGCTATTGCAGTTGGGATGTTTAAAATATAT21.06951871657754No Hit
GGTGGGAGGAGCTAGCGCCACCAGGCACCAGAGCAGTCTGTGAAGGGTTT21.06951871657754No Hit
AGCTACAGAAGAGGGTGGGGCCATTGCTAGGTTTCGCTTCTTAATTTCCA21.06951871657754No Hit
TCTCGCTGGAGCGCGCCGCGCTGAACATCGACGACGCGCGCATTCCCGAC21.06951871657754No Hit
CACTCCACCTGGGCAACAGAACAAGACCTTGTCTCAAAAAAAAAAAAAAA21.06951871657754No Hit
CAATTTATTATAATCTGTTAGTAGCACACAGACAAATATTAGTTAAACCA21.06951871657754No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATATT10.53475935828877No Hit
TTCCAGAAAACATTAAACTCAGAATTGTGTTTTCAGCAAAAAAAAAAAAA10.53475935828877No Hit
GGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCA10.53475935828877No Hit
GGCTGGAAGGGAAAGACAGCCTCCCGCTGCTCGGTCCCCCAGGCCCCGCC10.53475935828877No Hit
AGACGGGGAGGAAGAAGAAGAAGCAGAAGAGCAGGAAGACGAGCAAGAGG10.53475935828877No Hit
GAATGAGGAGAAAGAGATATTTCTGGTCTAGTTTACTCGTAGGACTCAAG10.53475935828877No Hit
GCCCCAGAGACAGCAGGGGAGAGGAAGCGTTCTGGCATAAAAAAGAGTTC10.53475935828877No Hit
CTTCTGGAGGGCCTGCTGCTCCTCCTCCAGCTGCTTGCAGCGGTCCTCAG10.53475935828877No Hit
GCATGGAGTTGCAAGTCCTCTGAAGACAATGAGAGGATTTAGGATGAGCC10.53475935828877No Hit
CTATTTCAACACCTTTTTCGGTGACAGTGGCGATTTGAAACCGGTTGTAA10.53475935828877No Hit
GTTTATAACCTATATTGAGCATTAATTTTTTTTTTCAATTTTAGCAGCCA10.53475935828877No Hit
GGCATGCCTGATGTTCCTTCTTTATTAAATGACGGAGTCAGGATGTTGTG10.53475935828877No Hit
GTGTTGAACCAGGGTTTAAACCCAGGTTTCCTCAACAAAACTATAAACTC10.53475935828877No Hit
GTGGTGGACCAGGCCACAGAGGCGGGGCAGAAAGCCATGGACCAGCTGGC10.53475935828877No Hit
GTTCTTAGATAATTCTAAAGCAAATTAGCAAACAAATACGCTATATTCTC10.53475935828877No Hit
GCCAAGAAGGAGGCGCCGCCCATGGAGAAGCCGGAAGTGGTGAAGACGCA10.53475935828877No Hit
GTTTGTTTGTTTGCAGTCTCTCTCTGCCATGGCCTTGGCAGGCTGCTGGA10.53475935828877No Hit
GTGTCGGTGCTGATCTTCGAATGTTTCTGTGCTTCCCTTAGGTCTAGCCA10.53475935828877No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTAAAA10.53475935828877No Hit
GGTTAGTGGTGCAGAGGGTGAGGTTGATGGAGAAGTGAGCAGCCAGTAGC10.53475935828877No Hit
GTTCTACGCCGTGCACAAGGAGCGTCCTTTCTTCAAGGACCTCGTCGAGT10.53475935828877No Hit
TCGCTGGACACCATGAATCACACTGTCCAAACCTTCTTCTCTCCTGTCAA10.53475935828877No Hit
ATACAGACTTATCAGCAGGTTGCAGGTGAACATGGCCTTGAGGTAAATCT10.53475935828877No Hit
GCTAGATTTTTTATGGGTTTAGCCTGGTATCACATTGAAATTGGCAAAGG10.53475935828877No Hit
GGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATATGC10.53475935828877No Hit
AGACATGTCAGATCTGTGCATGCTGCATACGGCCTGTGACTTCTCATGCA10.53475935828877No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTATAACAAAG10.53475935828877No Hit
AATCAATGTCGTCGGAAGATCCTGAATAAATCCTACTGTATCTGAAAGAA10.53475935828877No Hit
CAATGATTTCACAAACAGTAGCAAAAACTTACGTTTGTCCCAACCTAGAG10.53475935828877No Hit
GTCCACAATTTGCCGGTCATCTGAGGAGCCACCTCGCTTCAGGTCAATGA10.53475935828877No Hit
ATATAGAAGCTGGCGATGCAAACCAGCCGTCGCGATCGGCCTCCGCCGGA10.53475935828877No Hit
CGTAAAAACTTGACCGGTCTTTGCCAACCAGGACACCCACCTCAGCTGGC10.53475935828877No Hit
CCGGGAATCTGTGCCCCCTTCCATCATCATGTCGTCGCAGAAGGCGCTGG10.53475935828877No Hit
CCCTTGTATACGGACATATATAATTCATTTACGACCCACACAGATAATAA10.53475935828877No Hit
GCACTGCCGGCAGCGCGAGCCAGCCGCCCACCGCATGCACCACCACCGAG10.53475935828877No Hit
GCCTCACACCGTCCACGGGCTGGGCCTCGATCAGAAGGACTTGGGCCCCC10.53475935828877No Hit
ATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGT10.53475935828877No Hit
CACTAAGCATGTCCCCCTCCTTTTGACAGGAGAAAATGCTGCCGTACCCG10.53475935828877No Hit
GTACACATCCGATGGCCAGTCCCGGCAAGAAAGCCTACCCCCTGCGCATC10.53475935828877No Hit
GCTTAAAGCTACGAAAAAATCGTGGGTCAGTCGTTAAATCCAAACCGCGA10.53475935828877No Hit
GGATCAGTGGGGCCAGCTCAGCAGAGGCTTGTCCTGCTCCCCCCAACCCC10.53475935828877No Hit
GTATGCCCTGCCCGGACTGCATCATGAGTAGCAATCTGATTCTGCTCGCT10.53475935828877No Hit
GCTACAGGGTGACCAACGCAAGAACATATGCCAGTTCCTCGTAGAGATTG10.53475935828877No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.53475935828877No Hit
CAAGGAAGCGGCGGGCCTGTGAAGGCTGCCGTGACGCTCAAGACGCTGCT10.53475935828877No Hit
TATCAACGCAGAGTACATGGGATACGGCGACCACCGAGATCTACACTTTT10.53475935828877Illumina Single End PCR Primer 1 (96% over 28bp)
GGCTCTTTGCCTGCCACCAGCTGGCAGATGGCATCGAAGGCCTCCTCCTT10.53475935828877No Hit
TATCAACGCAGAGTACATGGGCAACGCAGAGTACATGGGAAGCAGTGGTA10.53475935828877No Hit
CTGACGGACGGGCCCGTGCTTCTGCCGCGGCGGCGGCGCCCGCGCGAGTC10.53475935828877No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA10.53475935828877No Hit
ATCTTCAGCTGCCCGCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCAT10.53475935828877No Hit
GTGGGAGAGGAGATGGAGGCGCAGGTAGGCGTCGGCCGCATCGGCCGGGG10.53475935828877No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACCGGTG10.53475935828877No Hit
TCCTTGGACTGCGGCGTCGAGTCAGCTGAAAGAACACTTTGCACAGTTCG10.53475935828877No Hit
CTCCTGATACTTAATCCTTTGTTCTTTCCATAATATCACATGGCAAAAGA10.53475935828877No Hit
ATCTCCTTCATGGCAAATTTCCGAATCTCTTTGAGTGCCCGAGGTGCACG10.53475935828877No Hit
GTATCAACGCAGAGAACTTTTTTATTTTTTTTATTTTTTATTATTTTTTG10.53475935828877No Hit
GTACCCATCCGATGGCCAGTCCCGGCAAGAAAGCCTACCCCCTGCGCATC10.53475935828877No Hit
GGTATCAACGCAGAGTACATGGGAATGATACGGCGACCACCGACATCTAC10.53475935828877Illumina Single End PCR Primer 1 (96% over 27bp)
GATAGCACACAGGTTGGTGTCTTCAAAAAGGCCAACCAGATAGGCCTCAC10.53475935828877No Hit
CATCATGACGATCGGGCCGAACACCGCGCCGACCTTGGCTGTGCCGCGCG10.53475935828877No Hit
GTGTTCGATGCGGCCCTGCAGTGCGTCGAAGGCCGTGTGCACCGCGTCGG10.53475935828877No Hit
TGCCCGTGCGGGCCACGTCCGCGCCGAACGGGTAGATCATCATGTCCGTG10.53475935828877No Hit
GTTTCAAGCAGGTCATTTTGAACCTCAAATAAGAAATCACAATATTTAGT10.53475935828877No Hit
AACACCGACTGCGCGACCTGCTGCTTCAGGAGCTCGCGCTGCTCGGCGCT10.53475935828877No Hit
CTCCAGGCTAATTGTATTTAGTCCCTGTTCAAGTCAATTATTGACCTTTT10.53475935828877No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAGAA10.53475935828877No Hit
GTCCGAGGGTAACAACATGATCAAAACCACAGCAGGAACCACAATAAGGA10.53475935828877No Hit
CTTGTATGATGCACTGTTCTTCCCAGGCTGTTTCACAAAGTGGGGTCGGC10.53475935828877No Hit
GGCTGCTACAAGGGCAAAGAAGAAAGCAGATAGGAATGTGCTTCGTAGTT10.53475935828877No Hit
GTGCAGCACCACCTCGATGGCGTCGGGGCCGGCGGTGCTGTCGTTGGTGA10.53475935828877No Hit
CCAGAAAAGGTTCGGCCTTAAGATAGATCGATGGTTGACAATCCAGAGTG10.53475935828877No Hit
CGGTGGTCGCCGTCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACA10.53475935828877No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.53475935828877Clontech Universal Primer Mix Long (100% over 23bp)
ACTTTGCACAGTTCGGCCATGTCAGAAGGTGCATTTTACCTTTTGACAAG10.53475935828877No Hit
GCAGGAGATGATGGAATACCGACACCAGATCCAGTCCTACACCTGCGAGA10.53475935828877No Hit
GAACCGAATGGAATCATTGAATGGAATCAAAGGCAATCATGGTCCAATGG10.53475935828877No Hit
GCCGAGGAGAAGCGCGAGGGCTACGAGCGTCTCCTGAAGATGCAAAACCA10.53475935828877No Hit
ACACTACTAAAGTTACCGTTCCGGTCAAAAGAGGATAAGTAAAGTTTGTT10.53475935828877No Hit
AAGTATATGTAACAAATAATCTGAAATTCAGCCCCATTAAGACATGTGGG10.53475935828877No Hit
CTGCGGACCGCTGCGGTGCTGCCCTGGCCGGTCATCAACTGATCCGCGGC10.53475935828877No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.53475935828877Clontech Universal Primer Mix Long (96% over 26bp)
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGATTGTTGGGA10.53475935828877No Hit
AAATTAATGTGAGGAAGCTCCTCCAATCCTCTGGCTATTTAAGGTTCAAA10.53475935828877No Hit
GTTCTGGTGGCTGAAAGCCCAAGATCAAGGTGTAAGTAGGGTTGGTTCCT10.53475935828877No Hit
TTGCAGACCATAGGAAGTTTATTGTGTCTTTGAGACACTACAATGCAGAC10.53475935828877No Hit
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCA10.53475935828877No Hit
ACACCAGAATCTCAGAAATCACACCCAAATAACTAAAAAAAAAAAAAAAC10.53475935828877No Hit
CACCTTCTTTGCCCATCAGCAGGACTAGCGTCTTGTCAGTCTTGGTGACA10.53475935828877No Hit
ACAATGCCCGGAGAGTTTACTATCTAGCTCGTTACAGAAAAAGTATGCCA10.53475935828877No Hit
AACGCAGAGTACATGGGCTCTCTGTCCACCTTCCAGCAGATGTGGATCAG10.53475935828877No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT10.53475935828877No Hit
ATCAACGCAGAGTACATGGGATGCTCTTGGAAAAATGGATCCAATAGACT10.53475935828877No Hit
CCTTCCTTCCTTCCTTCTGTCCTTCCTCTCTCTCTCTTTCTTTTGGCTTG10.53475935828877No Hit
GTCTTGATCCCAATTGTTTAAAATTTCCATTGAAAGTTCTCTTGTTTGCA10.53475935828877No Hit
CCCACATTTCTCGCACTTCAGGCAGGGCCGATGCCAGTCCTTGCCCAGAG10.53475935828877No Hit
GCCTTCTCATTTTGTCAATTGTTTCCTTTGCTGTGCAGAAGCTTTTTAGT10.53475935828877No Hit
CTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAA10.53475935828877No Hit
GTAGTTCTCCATCAGCTGGCGGAAGCTCACGCCGACCTTGAAGTGCTTCT10.53475935828877No Hit
TATCTCTGGTTAGCAATTTCATCTTCAGATAAATCTGAGTTGTTGATGTC10.53475935828877No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAGTATTGCTC10.53475935828877No Hit
ACACCAGAATCTCAGAAATCACACCCAAATAACTAAAAAAAAAAAAAAAA10.53475935828877No Hit
GAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGA10.53475935828877No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAA10.53475935828877Clontech Universal Primer Mix Long (95% over 22bp)
CTCTAATCATTCGCTTTACCGGATAAAACTGCGTGGCGGGGGTGCGTCGG10.53475935828877No Hit
GGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCA10.53475935828877No Hit
GTTATGCCGTCCTCCCAGTTTTTACCTAGCCCCCACCTCTCTGTGTGTTA10.53475935828877No Hit
GTCAGGACGCGGCCATCGTGGGCTACAAGGACTCGCCCTCCGTCTGGGCC10.53475935828877No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA10.53475935828877No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.53475935828877No Hit
CCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTTAGGCAGGTGGATCAC10.53475935828877No Hit
TAGTCAACCAGATGTGTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCG10.53475935828877No Hit
ATTTAGGTGTCGGGACTGCTCTGCCACAGCTGCCCACCTGGGGCGCGTCC10.53475935828877No Hit
CCAGGATCCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCACGA10.53475935828877No Hit
GTCACAGGTAAGGCTGGTCCGAGGACAGCTCCCACCTCTTTATGGGAGGA10.53475935828877No Hit
GGTTTAATTCAGTGGAGTTCAGACCTCATTCCTATATCATTGCAGTGTGG10.53475935828877No Hit
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGG10.53475935828877No Hit
CTGCTACCTTTCCTTCTCCTCCACCACAGGAGGAGGAGGCACAGCAGTCC10.53475935828877No Hit
GTTTAATGAAGTCTGAAAGGTAAGCGCCATCGTGGTCAGAGATACGGAGG10.53475935828877No Hit
CCGTGGACCCCTAAGCCGAGCTGGTGGAAGGCCCCTCCCCGTCGCCAGCC10.53475935828877No Hit
TGCACTTCTTTATTGGAAAAGAATAAAGCAGTCACTGATGTGGCAGGGGC10.53475935828877No Hit
GGATATGGGTACGGCCCGGCGCGAGATTTACACCCTCTCCCCCGGATTTT10.53475935828877No Hit
ATCTTGGCCCAGTCCTCGATGGGCATGTCGAGGAAGGGCGGCGTGCGCCC10.53475935828877No Hit
CTGGAAATGATTTCCCCCTTTTTTTTAAGTGCTCCAGTTTTTCCCACCTT10.53475935828877No Hit
GACCTGTAGGTCCGGGGGCGCGGCGGAGCTGGGACCTACCTGCCTGAGTC10.53475935828877No Hit
ATCAATCACCTCCTCAGAGAAAGTCTGCTCAGGAAACTCTCCTCCCACCA10.53475935828877No Hit
CAACTAGGAATCACACATTAGTAAGCAAGTTCATTTCCATTTCCTGAAGG10.53475935828877No Hit
ACCATGAAGTTCTCGTCATCACGATCGGGGAAGTCCTCGCGGGCGTAACC10.53475935828877No Hit
GTGTTGATTTATCTCACAAAGTTAAACCTTTCTTTTGATTCATCTCGTTG10.53475935828877No Hit
GGTATCAACGCAGAGTACATGGGCAGGCTGACCACAGCACAGCCAACACG10.53475935828877No Hit
GTCACCACAGAGATCGCTCCCGCCGACCGTACGGAGCCAGTGGAGTTCTC10.53475935828877No Hit
GCCCCCCAACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGG10.53475935828877No Hit
GTGCACGTAGAGAGTTGGCTTTAATAATTACTTTAAAGTTTTTCAGCTCC10.53475935828877No Hit
GTATCAACGCAGAGTACATGGGCCTCGACACAAGGGTTTGACTTTCAATA10.53475935828877No Hit

[OK]Adapter Content

Adapter graph