FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112
Sequences flagged as poor quality0
Sequence length140
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATGCAACACCTTTCACAACAGACAGCTTCTCCAAAGTTGCAGATAAA32.6785714285714284No Hit
GTCTTGAACTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTTC32.6785714285714284No Hit
TAGTAATCCAGGAAAAAATTTGCGAAAACATACAAAATTTCTGTGAGGCT32.6785714285714284No Hit
GGTCATCCCAGCCAAGGCCATGTCCTCTCTGCTCAGCCAACAACTGTCCA32.6785714285714284No Hit
CATGGACACGAAGGAAGGAAAAACAAACACCAGGGCCCCCTTAAGGGTGG21.7857142857142856No Hit
GCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTG21.7857142857142856No Hit
GTTCTGAGGAACTAAATTGCTGGGTTATATGGTATAAACATTTTGAAATA21.7857142857142856No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG21.7857142857142856No Hit
TTGAATGGACTCTAGTAGAATCATTATCAAATGGAATCAAATGGAATCAT21.7857142857142856No Hit
CAAGAATTTCATCACTTTGGACAACTACAAATAATGAAGGAAAGAAATAA21.7857142857142856No Hit
GCAGTTGGATGTGTCACGCATGTATTTATGTAACTAAAATTTGTTTTTAT21.7857142857142856No Hit
GAACTCTAGAAGATCATATGCACTTGCAGGGATGTGCACAAGCGCAGAAA21.7857142857142856No Hit
ACTACAGTATAACAGTATTATGGCACAAGTTCTGCTTGAAAATCAATAAT21.7857142857142856No Hit
CTGAGGGCGGGTCTGCATCTCCCAGACCACTGATTCACATGTTAATCCCT21.7857142857142856No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.7857142857142856Clontech Universal Primer Mix Long (96% over 26bp)
GTTAAAAGAATATTGGCAGAAAAACAGCCCTAGAGTTCCAGAAGGAGCCA21.7857142857142856No Hit
CTTCAGCCTCGTGAGCCCGAACAGTCCATAGGGCGGCGCCAGACCCTCTT21.7857142857142856No Hit
GCTCTTGGCTTGGGGCTTCTGGAAGATTTGTTTAATTGCCAAATCTTATA21.7857142857142856No Hit
AATTTGAACTGATTTCTGGAGAATGGGTTGAATTCCAATAGAGGGAGATG10.8928571428571428No Hit
AAATAAGAATGTGCAATTTAGAAAGAATATTGTGAGAATTCTTTTTTTTG10.8928571428571428No Hit
CAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCC10.8928571428571428No Hit
CAGCACAATAAAGTAACCACATTTGAGCATGTTTATAAATCCTAAGCTTA10.8928571428571428No Hit
CAATCCATGCGATTCCATTCGAAATCGAATCAATTACATTGCAATCCATT10.8928571428571428No Hit
ATGCTCCGCCACGTACTCAAAAAGCATGGTGCGGGCAAAAGGCGAAGGCC10.8928571428571428No Hit
CTCCCATTTCACAGATGTCCAGCTGACCCAATCCCTAGGTACCGTATCAT10.8928571428571428No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
CAGCTCTTGGTGACTAGCAGGATGGGGACTTTCTAAGACAAACCAGCAGG10.8928571428571428No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.8928571428571428Clontech Universal Primer Mix Long (96% over 26bp)
CACACCTTGATATTCCGAACCCGAGCACCCTCATCCAACGAATGCTCCAC10.8928571428571428No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.8928571428571428Clontech SMART CDS Primer II A (96% over 26bp)
GAGATTTAGATCTATAGTTGAAATATTAACCTTTTGGGATTTAAGGTGCA10.8928571428571428No Hit
GGTGACAAGGACTGTGATGGCCTTAAATTTTGTTAAAACGGCTCAACTGA10.8928571428571428No Hit
GTACATGGGGCCTTTGAGGAATTGAAGGAAGACAGGTAGGTCGGTTCTTG10.8928571428571428No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.8928571428571428Clontech Universal Primer Mix Long (96% over 26bp)
TTACTGGGCTTCAGGACTCCCCCAGTCTCCTGATTTTTTCCCCCTACTCT10.8928571428571428No Hit
GAAGGAGGCCGAGTGGGACCTATCCCTGTCCGAGGTGTTGCCGGAGCTCC10.8928571428571428No Hit
GCAAGGTTTGCAGACGCAGTGTCTCCCCAAAGTCACAGAATCAGTGATAG10.8928571428571428No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.8928571428571428Clontech Universal Primer Mix Long (96% over 26bp)
TTTACATTCCATGCTATTATTGACAAGTAAGGATTTACTCCTGCCATTTA10.8928571428571428No Hit
GTCCGACCGCAAGGTGTGGTGCTTCATCGGCGACGGCGAGAGCGACGAGC10.8928571428571428No Hit
TCATCGAAGCGGCCACCGCGCGTCTCATCCCCAGCGACGACGTGGGGCCG10.8928571428571428No Hit
GACAGAAGATAGGCACAGAAAGAGAGACAGACACAGAGAGAGACAGAGAG10.8928571428571428No Hit
GGTTTGAATCACTGTTTCTGTAGTATCTGGAAGTGGGTATTTCGAGCGCT10.8928571428571428No Hit
GCCCTGGATATGGCCTTCGACCGGTTCTGGCGCGCCGAAACATCCCGCGC10.8928571428571428No Hit
GTATAACTCTCAATCAAAAATAAGTGCAACTTTCATAAATTTCTTAAAAT10.8928571428571428No Hit
GTACATGGGGAAGCAGTGGTATCAACGCAGAGTACATGGGGAAGCAGTGG10.8928571428571428Clontech Universal Primer Mix Long (96% over 27bp)
TTGCCGGCCTGCTTCATCAGCATCGCCAGCAGATCGAATTCGGCTGTTGT10.8928571428571428No Hit
CGCGAACTGATCGCGGAATTGCGTTTGCCGGGGGTCAGCGTGGCCTTCTA10.8928571428571428No Hit
GAGAATGCTTCTGTCTAGTTGTTATGGGAAGAGATTTCCTTTTCCAACGT10.8928571428571428No Hit
CTTTTATTACAATTCTTACACTTATTTCTCTGAATAGCATTACTTCATCA10.8928571428571428No Hit
GTTTTAAAGGATGAAAAATCGGAAGCTCATAGAGGTTAGTCTATTTGCTT10.8928571428571428No Hit
GTGCAAATCGCAGTGATGAGTAGAGTAAAACCTCTACTTCGAGCACAGTA10.8928571428571428No Hit
GGCATGGTGGCTCACATCTGTAATCCCAGCACATTGGGAGGCCAAGGCGG10.8928571428571428No Hit
CCCCGGGACCTCTTGCCCCAATTCCTCCGCCTTGCCGGGAAAGGTTGAAC10.8928571428571428No Hit
GTCTGAGGTGGGAGGATTGCTTAGACCCGAGAGGTCGAGGCTGCAGTGAG10.8928571428571428No Hit
GTTGCTCCCTGGGTACTCTTCTGTTGGTGTGAAAAAGACTACTACTTGCC10.8928571428571428No Hit
AGTCAATCCCTAGTCAAGTCCAAATAAGCTAAGTGTTGGCTTGAACAATT10.8928571428571428No Hit
GCTTGGGTGCGTTCAAGATTCAGCTTCACCCGTAACCCACCGCCATGGCC10.8928571428571428No Hit
TTATGTAACTACTTCAGTGTATATGTGGTTAATGCTTATGTGTCCTTTGG10.8928571428571428No Hit
GAATATGGTTAAGCAGAGTCTCAACTGAATATCCTTTGGTCATTGATGTT10.8928571428571428No Hit
ATCTTCATATATGTTCTAGGAGCAGCAATACCAGCATTAGGATGGGCCTC10.8928571428571428No Hit
GTTCCAACATGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGG10.8928571428571428No Hit
GCAGAGAGACTCACAGCAACTCTCCATTATAGCTTTCACACGGTTTGGAT10.8928571428571428No Hit
CCCCCACCCATCCCTTCTATTGCTGCCTCCATAACAAACCTCTCACCACA10.8928571428571428No Hit
CCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGT10.8928571428571428No Hit
GTATAATAATAATAATAAAAAAACAAAAAAAAACCAGTGCAATAAAAACA10.8928571428571428No Hit
TCATTATTCCTGATAATCTTCCTTGTTTGGAAGTCTGGGTTTTTTTCCTT10.8928571428571428No Hit
GTGAGACAAACATCCCATCTTTCATTTGCAAGCTCATGAATAACTTTCAG10.8928571428571428No Hit
GAATACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATCTGG10.8928571428571428No Hit
GCATCAACCCTCCCCCATGTGCAAATACCGGTTTTATTCATTAACTGACT10.8928571428571428No Hit
GCCTATGGCAGTTATTACAGTGGTGATCTAATGGTGATTTTTTTTGCTTC10.8928571428571428No Hit
AACAAATACCACATGTTCTCATATGTGGAATCTACAACTCATATAAGTGG10.8928571428571428No Hit
CCTTGCACGTCATCGTAGAATTCATACTGGAGAGAAACCTTACAAATGTG10.8928571428571428No Hit
ACATGGGGCAGTCTCATTCCTGCAGAACCTGGAGGGGTTTGAGGAATAAT10.8928571428571428No Hit
CAGCAATACGTTCACCGGGACTTGGCAGCAAGAAATGTCCTTGTTGAGAG10.8928571428571428No Hit
GACGATATTCCCATTTCCAATGTAGCACTCAAAGAGCTCCAAATATCCTC10.8928571428571428No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTAAAAAAATGAA10.8928571428571428No Hit
GTCGGGGATTCTGTCCCCATATCAAAGCAGATCAAGATCAAGTTCATTTC10.8928571428571428No Hit
AGCCGCGCTTTCCAGAAGTCGCGGCCGTACTGCGGCATGGCGCTGATGGC10.8928571428571428No Hit
GTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGA10.8928571428571428No Hit
GAGCGAGGAAGAAAAGAAACAAGAAAGGAAGGAAGAAGAAAAGAAAAGAA10.8928571428571428No Hit
GGGTTATGAAACAGGACTGGGTCAGTTCAAGCCCGCCAGCTATGAACCAA10.8928571428571428No Hit
GGGATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTTC10.8928571428571428No Hit
ATCTATATGTGTTGTGGGTGAGCTCTGATTGTCTTAGAAAATAAACACAA10.8928571428571428No Hit
TTATTTAGCTCTAGACAGAGAACTCTGTTGGCCATTCTGTGCCCAGATCC10.8928571428571428No Hit
CTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCA10.8928571428571428No Hit
GGCGTACGCCGACCCCGACGGCGACGGCGTGGCCGACGCGCTGTACTTTC10.8928571428571428No Hit
AGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGC10.8928571428571428No Hit
AAACAAATGGAAGCATCTTCGACTGGAATTGAATGAAATCATCGAGTGGA10.8928571428571428No Hit
GTAGATGATAGACAAGCGATCCAATGGATGTTACCGGTCCAAAGCCCACA10.8928571428571428No Hit

[WARN]Adapter Content

Adapter graph