FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107
Sequences flagged as poor quality0
Sequence length140
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAG32.803738317757009No Hit
ACTACTCAACTCTGCCAGAAATACAGGACTGGACCAGGCAGTGTGCCAAT32.803738317757009No Hit
CACCCGGTTTGGCCAGCAGGCTCGGGTCCTTGAGAACGGTATCGATGATC32.803738317757009No Hit
GACAAAAATGCTTTCCTTGACATAATCTCAGTACAGTCTGCCTTAATTCT21.8691588785046727No Hit
GTTCAACTCTGTGAGTTGAATACACACAACACAAGGAAGTTACTGAGAAT21.8691588785046727No Hit
CACCAGCCATGTGTACCAGCTCCTGAGTAGCAGACTGCACACCAGCTTGA21.8691588785046727No Hit
ACGAAGATGTGGGGTCGTTCGAAACCGCACAGGGGCCGGAGCGCTGGACG21.8691588785046727No Hit
CTTAATATTGGTCGATCCCTACTGCACGCAGTGGCTCACGCCTGTAATCC21.8691588785046727No Hit
TTTCTACTCAAACTATTCTGAAAAATAGAGAAGGGAATACTTCCAATCCT21.8691588785046727No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.8691588785046727Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GATAGATGTGATGCTCATTGTGCATCAAATGTACAACACTTGTCACATGC21.8691588785046727No Hit
GTGTTGCTGCCCAAACAGATTTACTCTCAGTGCAGCAAACAGTCCTGTTC21.8691588785046727No Hit
CTGTATATCCGTCATACTTGTTTCTTTGCATGTGTTAAAAAATTTACCTT21.8691588785046727No Hit
CGCTGTGGGTTGCAAACGATGGTCCGGTGCTGCCCGAAGGATTTGACCCA21.8691588785046727No Hit
GTGTCGGAGTGCCTCGCGCTGGGCAAGCCGATGCTGCTGATCTCGCCCAT21.8691588785046727No Hit
AGATCGGACGGCGCGCCTACCGGCGCTGGTGGTCGAGCTTCATGACGCTC21.8691588785046727No Hit
GGACTCAGCTGCGGATGGCTCAACTGGCACTCAAGAACCACAGACACACT21.8691588785046727No Hit
CTGCATCTGTGTAGTTTTTGTGCCAGCCCTGGGTTGAAGACCAAACCTTG21.8691588785046727No Hit
GGATGAGGCCAGATGCAAAGAGAGCCAACAGGAGGCACAGGAGAATCTCA10.9345794392523363No Hit
GCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA10.9345794392523363No Hit
GCTGGCAGTGTTCCCGTCATTGAGCTCACCACAGACCGGGGCTTCTGCGA10.9345794392523363No Hit
ATTAGAAACTACTTGGTGATATCTGCATTCAAGTCACAGAGTTGAACATT10.9345794392523363No Hit
TCAATAGCCAGGGTGCCCTGCTGCAGCAGTGGGTGAAGTTTTTTAATTTG10.9345794392523363No Hit
CTTCTTCCATCAAACCATATGTTCTTACCAATTAATCAACTTCTCTTCCT10.9345794392523363No Hit
ACGGCTGGCGGCTGACCGCCATCACCCTGGGGGAGGCGCGAGCCGCAGCC10.9345794392523363No Hit
GGCCCTCTAGATTTCCATCCCATTGACAAAGAAGCCAATACTCACTTCAT10.9345794392523363No Hit
GGACAATTGCACAGCATTTGCAAGCATTGTAACCTGCAGAGGATGCTTGC10.9345794392523363No Hit
GCATTCCAGCCCGAGTGACGGAGTGAGACTCCATCTCAAAAAAACAAAAA10.9345794392523363No Hit
GTGGAGGACCATTGTCCAGCATGCTCCAGTCAGAGTATGAAGGGCCATTG10.9345794392523363No Hit
TCGCCGTTGTGTTCGACCGACACCTCGTGACGATTCACGGCTATCTGACG10.9345794392523363No Hit
CTTTACCAGAAGATTTGTCTTTTTGACTGTCAGCATTTGGCAAGGCATAG10.9345794392523363No Hit
ATTCCATTCCATTCCTTTCCATTCCATTCCTTTCCTCTCGTGTTGATTCC10.9345794392523363No Hit
CATATTATCATTGCATCTATGTAAGAATACCATTCAAAGGAGCAATGAAA10.9345794392523363No Hit
CAAATAGGGTGTCCACTAAACGAGGGTAACCTCAGCTCATGGATACGATT10.9345794392523363No Hit
TCCAGCAGCACATCAAAAAGCTTATCCACCACAATCAAGTTGGCTTCATC10.9345794392523363No Hit
GGCCTAGGGGAAGGGGGCCAGGGGACTCCTTAAGACAGCCTACCATGTGT10.9345794392523363No Hit
GCCCAGCATGGTGAAGTGATCTGCTCAGGGACATACCATGTGGAAACAGC10.9345794392523363No Hit
ACTCGGCCGTGAGCTTCTCGAAGAGCTTGAGCGAGCTGCTGTTCTTGCCG10.9345794392523363No Hit
ATAAAATGTACCATAATTAGAGAAAAGAACTCATAGTATTGACTAATAAT10.9345794392523363No Hit
TCATGGAATAGATTCGAATGGAATCATTGAATGGAATGGAATGGAATCAT10.9345794392523363No Hit
AGCTTGCAGTGAGCCGAGATAGTGCCACTGCACTCCAACCTGGGCGACAG10.9345794392523363No Hit
GGGTACCATGCATCTTGACTCCCTGCCTTGGTGGGCTTAACTGACTGGCA10.9345794392523363No Hit
CCACGTGATGGGTGATCGTGGGTTCCCATGTCTCCTCCTCCCTGGTCCTC10.9345794392523363No Hit
TCTTTCTTCTTTTTTCTTTACACTCACTTTCTCTACTTCTTTTTCTATCT10.9345794392523363No Hit
CTGCATCCTTGCGCCGACCTGCGCGCCGGAGCCGGTGGCAACGGAAAGCC10.9345794392523363No Hit
AGTCTATGCATTAGACTCCTGTTTCCAGTGCAGTTGGACAGGATTTATCT10.9345794392523363No Hit
GCCGCGATCGTCGCGATCTCTGCGCCGAAAAATGAGAACACCACGACCAG10.9345794392523363No Hit
CTTCTGGAACGCGAAGATCAAGTAAGAAGGCGGAGACACACAGCCATGCC10.9345794392523363No Hit
CCTCATAACCCAGCTCAGGACTGTGCACAGAAGAACTTGCTTAGTGAGTC10.9345794392523363No Hit
GGTCGAGAAGCTGCCGGTCGTGGACGCGGACGGGAAGCTCAAGGGCCTCA10.9345794392523363No Hit
TGCTAATATTTGAGCAATACAGAGGATTAAGAGATCAAGATACTTCACTG10.9345794392523363No Hit
CTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGA10.9345794392523363No Hit
ATCGTCGGCAGGTCGGCGATGAGGGCTTGCGGGGCGCGGCAGCTCATGGT10.9345794392523363No Hit
AGGCATTGATTTGCACCATCACACTCAGGTGGAAGGTGATTACATTTTAC10.9345794392523363No Hit
GTAAGTTTCCTGGGGCCTCCCAGCCATGCTTCCTGTACAGCCTGTGGAAG10.9345794392523363No Hit
GGACAGAATCGTAAATTAAAATCCCCAAATAAGAAAGTCTGAGTCAAGAA10.9345794392523363No Hit
GGACAATTGCACAGCATTTGCAAGCATTGGAACCTGCAGAGGATGCTTGC10.9345794392523363No Hit
GTATAGGAACAGGTAGTAAAGTTGAGCTTCCAATACCTGTCTCTAAATCC10.9345794392523363No Hit
CTCAGAAACTTATTTGCCATGTGTGTTCTCAACTAACAGAGTTGAACCTT10.9345794392523363No Hit
GCCTTCACTTTTCTGTTTTCCAGTTTTCTTATCACTAACATAGGAATAAC10.9345794392523363No Hit
GTACATAAGTATTACATATGTAAAGTAGTGAGCATAATCAACTGCCAGTA10.9345794392523363No Hit
ATCTTACACAACTCCTATTGTAAGTCTAGACGTTGAACTCATCGTGTGGT10.9345794392523363No Hit
CAGCTACTCGGGAGGCTGAGGCAGAAAAATCGCTTGAATCTGAGAGGCGG10.9345794392523363No Hit
TTGTCGAGCAGCACTTCGAGCAGCGTGGCCAGCACCAGCTCCTGGCCCTT10.9345794392523363No Hit
GCCAAGTCGAGGTCATGAATGACGGTGACCGTCGTCAGGCCGAGTCCCCG10.9345794392523363No Hit
GTGGACAGTGAGGAATAAGCTGGAACCAATGTCAGGAGCCCGAAAGGAAG10.9345794392523363No Hit
GTTGATAATTCTGATGTAATTGTTCGTCCTTATTTCTCCATAGGTTATTT10.9345794392523363No Hit
AGGCTGGGCAGCTGGCTTGCCCTGTGCCCTGCCCTCCTCTACAGCCTCAA10.9345794392523363No Hit
TGAAATGGTGGAGTCCAACTTGCCTGGACCAGCTTAATGGTTCTGCTCCT10.9345794392523363No Hit
AATTAAAAGCCTTCCAACAAGCTTCCTTTCCACCACAGGAAATCCTGTTG10.9345794392523363No Hit
GTAGTTGAATTCATCAATCTTTTATTTTGTATGGCTTTTTGGTTATGTAT10.9345794392523363No Hit
TTGCTGTAGTTACAAGCAGGTAGCACAAAATGTCCTGTACAGCCTTCTGC10.9345794392523363No Hit
GGATCCGGGTTTGCGCGGTACCCACGCTCAGTCCGCATGGGTCAATGATT10.9345794392523363No Hit
TCTATGGACCTACTTTTAAATTCTGGATCCCTTCACTGGCTGTAGTGTCA10.9345794392523363No Hit
TCTGTAAGCTATGTTGTTGGCCCAGTCTGCTTGCATTACAGCTGGGTAAA10.9345794392523363No Hit
CGCCGGTAGCGTGCGCCACGCCCTGCAAATTGACAAACCAGTTGAACGCG10.9345794392523363No Hit
GATCACTTGAGGTCAGAAGTTCGAGACAAGCATGGCCAACATGGTGAAAC10.9345794392523363No Hit
GCCGAAATTGTGCTCCAGCCTGGGCAGCAGAGTGAGATTCTGTCTCAAAA10.9345794392523363No Hit
GTCAAGCAGGTGGCAGAGCAGAAACGGATTAAGAGCACAGGCTCCCAAAC10.9345794392523363No Hit
GTGTCTTTGTTCTCATTGGTTTCAAAGAACTTATTTATTTCTCCCTTAAT10.9345794392523363No Hit
TACATCTACAGTGAACTCACTTTTGACAAAGGTGCCAAGAACGAACATTG10.9345794392523363No Hit
GTGAAGGACTCTCGGAACTTGAGATGGCACTAAGGCACTAAGAGGATTTG10.9345794392523363No Hit
GTATTTGACTAAATGAACTTAATCACTTCAAACCAAAATTGTTCTTTCTG10.9345794392523363No Hit
GTGCACGCAGCCCTCGAAGCGTGCCGAGCTGATCGACTGCCTCGCGCCGA10.9345794392523363No Hit
ATTATCATATTCAAAGTAAGATTTCAGCTCAAAAATGGCCCACAGGACAT10.9345794392523363No Hit
ATTTATGCGTTGACTGTGAGAATAGGGAGCAGTGCCATGGGACATTTCTA10.9345794392523363No Hit

[WARN]Adapter Content

Adapter graph