FastQCFastQC Report
Wed 8 May 2024
EGAF00003645480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1345037
Total Bases188.3 Mbp
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG17210.1279518704689908No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA14210.1056476513285508No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA13590.1010381127061932No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT13460.1000715965434408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)