FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length140
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATGAAGCGGCGCACCGCATCGGCAAGTTGCTTCTGTTCGTCGGTGAAC37.894736842105263No Hit
CAGCCAGACCTCGCCATCGGCAGGCAAACCTGTGCTGCTCAGCACGCCAC25.263157894736842No Hit
GAGTCCCTGGATCTCACGAACGAACGCTATGTCTATCGCACCGGCGTGCC25.263157894736842No Hit
ACTTTCAGCAGACCTTCAATATAGGTGGATTGCAGTTTGCCGATCTGACG25.263157894736842No Hit
GTTGTGTTTTGGCATGCTAGCGTCCTTGCGCGACGTGTGCCACGAGGGCT25.263157894736842No Hit
TGACCGGGCACGGCGTCACGCACTTGTGGCAAACCGTGCAGTGGTCGCCC25.263157894736842No Hit
GAATGCGCTGCTGCATCGCACCGGCTATCGCGAAGGCTGGGTCGTGCGGG25.263157894736842No Hit
CAGCTCGGGCATGGGCACTGCCTCGCCGGTGGTCTGGTTGACGGCTTCCA25.263157894736842No Hit
GGTGATCCAAGGGGAAAAATGGGTTGTGCGCGACTTCCCACAGGTGACCG12.631578947368421No Hit
ACCGCACGCCGCTCACCCTGCGCGGCGGCGGCACAAAGGATTTCTATGGC12.631578947368421No Hit
GACCTATCTCGGTTCGTTCAAGACCACGGCCGTATTCGCCATTGGCGTCG12.631578947368421No Hit
CTTCATGACCTCGGTCGGCTCGCCGATGTTGATGTCGTCAACGAACAGTG12.631578947368421No Hit
CGTGATGGGTGGCGCGATGATGTACCGTGCGGGCGAGGTGTTATCGAACC12.631578947368421No Hit
GTCGTTCTCCGGTGTGCGCGCGCTCGACGGCGTCAGCCTGGCAGTGAGGC12.631578947368421No Hit
CACGGGGACCTGGGCCATGATCCGCAGCTGCGTGCAGATTTCGCCGGCCA12.631578947368421No Hit
GGCGGTGAAGGTCGTGACCTGGTTGGCGACGCCGAGCTCGACGGTGGCCG12.631578947368421No Hit
ATTGTAGCGTTGCCGTCCCACGCCGCCGAAGCCAAATCGTCCGCAAACCG12.631578947368421No Hit
CATCGTGGTCCAGCGATTGCAGCTCGTCGGGCGTGAGCATGCGATCGCCA12.631578947368421No Hit
GGTCCGAACGGGGGACTGATGCTGGACGTGGCCGGCATCGACGCTGAACT12.631578947368421No Hit
GTGCCTGGCCGGCAGATACCGACATCGCTTCGCGCGCCAACCTGCTCGTG12.631578947368421No Hit
GCGCTGGCACCGCTTCGACGCCGCCGCCGTGCAAGCCGCGCTGGACCGCG12.631578947368421No Hit
CTGATACCCACGCCGCGAAGCCTCTCGCGGCCCTGCCTTCGGCGACGCAG12.631578947368421No Hit
GGCCGAAGCCGTTCCGCATTGCGCCAGTAGTAGCTAATGCTTGCTGCGTT12.631578947368421No Hit
CGTGTCGCCGGTGCGCGTGCTGGCGCGTTTGGTACTCATGGGTCTGCCGT12.631578947368421No Hit
CTCGAACGTAGCCCAGATCAGCAGCCTCTCGACTTCGCGGCGGTAGGCGC12.631578947368421No Hit
CCTCGCGCGGCATCGGCGCGGCCATTGCGCACGTGCTGGCGCGTGACGGT12.631578947368421No Hit
GATCTTGCGGAAGCCCTCGGCCTCGCACTGCGTGAAGAAGTTGCCGTTGG12.631578947368421No Hit
TCCCGAATGTCCGCCTGAGGTTGTTGAGGCCGCGGATTTTTCCGGCTCTA12.631578947368421No Hit
GACCTACTCGACGTCTGCACGGATCAACGGCCAGCCGATCTCGGCGATTG12.631578947368421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)