FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length140
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCCGGGCCCCGAGGCGTCGCTGCTCAAGATCAAGGGCACGCAGATCCA37.894736842105263No Hit
CCCTGTGGGCAACCGGAGATCTTGTCATGCACTTTCAAATTCGAATCACT25.263157894736842No Hit
GGCGAAGGGCATCGAGGTGGTCGTCTACGAGCCGACCTTTGACGGCGACG25.263157894736842No Hit
GTCATGCACCGCCGCCTGCGGCCGGTGGCCAATCGCTTTGTCTATCCGGT25.263157894736842No Hit
CGCTGCGGCACCATGCCGGCCATCACCTTGGCGCCCCAGGGCAAGCCGTA25.263157894736842No Hit
TCTGAAGCGTATGGGCGAAGAACTGGGCGCCAAGTTGAAAGAGTATGAAG25.263157894736842No Hit
GATGCGGCCGTGCTGCGCAGCCTGCGCGCCATCGCCAAGCGCCACGCCAT25.263157894736842No Hit
GCCTATACGCCGTCGTTCGGCCTGATGGGGCACGAGTCGATCATCATGCA25.263157894736842No Hit
GAACTAATACGTGAGGCAAAAGCTGCAGGAAGGACGCGATATTTCACCGG12.631578947368421No Hit
GTGCGCGAGGCAGCAATAGTTGCCAATGACTATTCGATTATTCGCATGAT12.631578947368421No Hit
GTCCTGCTGCGGCAAGCGCTCGCTCATACTTCCAGCATCCTTTCCACCGC12.631578947368421No Hit
GTTTTCCACCACCACGATGGCATCGTCAACGAGAATACCGATCGCCAGCA12.631578947368421No Hit
GTGTGATCCTCTCGCTGTTTGGCCGCAGTGACTTGGCCCAGGATTCCGGG12.631578947368421No Hit
CCACCAGCGTCAGTGCCTGCCCGCCGTTGAGCACAAAGTTCCAGTCCACG12.631578947368421No Hit
CTTACCGCCTGGGCTGGTCGGAGGTGTGCAAAGACGGTACGAAGATGAGC12.631578947368421No Hit
TTTCCCTTCAGCGGTCTTGATCGTGAGGGTGATTGTAGCGCCGGCGGGGA12.631578947368421No Hit
GCTTTCCGCATTGACGAAGTGGCCCTGGAGATCGATCTCGTGCCCGAGCG12.631578947368421No Hit
GCGCAGCATCGGATTCGCGCGCAAGCGCAGCATCGGATTCGCGCGCGAGC12.631578947368421No Hit
GCCCACGAGTTTGGCGACGCACTGCCCGTGCATGACGGTGCGTCGGGCCT12.631578947368421No Hit
AGCGCAAACAGCCAGCGCTGGCGCGTCGGTTCCAGCGTAATGTTGTAGTC12.631578947368421No Hit
ACACGGGATCGCAGGCCGCCGACAACGCCGAGTTGTTGGTGCCGGCCACG12.631578947368421No Hit
GTTGGCGGCCAGCGAGTCGGCGGTGACGAAGAAGCCGAGGTTGCGCTTGA12.631578947368421No Hit
GCTCAACCGCGTCGTGTCCCGCTCGATCGACGCGCAGAGCGTCCTCGGCG12.631578947368421No Hit
CATCAGTTCCTGGTGGATGATGACGATGCCAGCGCGCTCGCTGTCGCGCA12.631578947368421No Hit
GCTCCCCGCTGCCGCAGGTGCCGCTCAAGGGCGATTACGCGTGGCGCGAT12.631578947368421No Hit
GCATCTGCTTGTGCTCGGCCAATGCGGCTTCGATCTCGACCAGCGGTGTA12.631578947368421No Hit
GCCCTGGCGGCCATCGCCGGGGCGCGGCCCGACGTGATCTCCATGGATAT12.631578947368421No Hit
GGGCGGGTGTCTCGGGCGCAGCAATGTCGTAGGCCATGGCCTCACCGCCG12.631578947368421No Hit
CTGCTGCCCGATCGCCTGGCCGCCATCACGCGCGAGGTGACGCTTTCCGA12.631578947368421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)