FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACTTTGGTGAATGCCTGATCAAAGACCGGTTTCAAATCATCGCTCTG48.51063829787234No Hit
GGCCAATACCGATGCCGCGTGTCGACGTTTGTTGCGGGGCCGCTTGATAG24.25531914893617No Hit
GCGCCCGCCTGGCGCGTCGTGATTGGGGAGGAATCACCCATGTGCTTGCT24.25531914893617No Hit
ATCCGAGGAGTCCAGAAGCGTTTCGGCGGCCTGCAAGCGCTGTCCGACGT24.25531914893617No Hit
AGAATCCCCAGGCCGTGCTGCCCATCGCGTCCATCACCAAGCTGATGACG24.25531914893617No Hit
CCAAATGACCGATAAAGACAAGATCGACAATGATCGACTCACGATCACAC24.25531914893617No Hit
CGGACAACGCCGCCAGTTGGTCGGCCTGATGTTCCTGGATAATCGGTTCA24.25531914893617No Hit
GGCTTGGCGCACGGCGGCGCATTGAATTCGTAGTCTGTAACAGCAATAAA12.127659574468085No Hit
GACCACCGAGATCACCGGTGACGGCCAGAAGGTCAATGGCCTGCGCTACA12.127659574468085No Hit
AATCAGCATGTTGCGTGACATGACAATACATGCATTAAAATATTCTCGCA12.127659574468085No Hit
GCGTGGTGGAAGGCACGATCCGCATCGGCGCCACCAGCGCAGACGGGCGC12.127659574468085No Hit
GTAAAAACGCAAATCACAACATGCGACGTCCTGTAGTCAACAAGGATATC12.127659574468085No Hit
GGGCACGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCTGACACG12.127659574468085No Hit
GTAGAGCGCCTCGTGCAGCGTCGCCAGCACGCCGCGCTGGCCAGCCGCGC12.127659574468085No Hit
CTACCGGCATTGATCGCTGGTCGGAGGTAATAAGGATTTTCACATGAACT12.127659574468085No Hit
ACCTCCTGCATGGAGGTCTCGCCCGTTTCCTTGTTCTTGACGGCCATGCG12.127659574468085No Hit
GTGCGGATCTGGCTGTGTCCACTAGCCCACTGCAGACGGGCAGGAAGGGC12.127659574468085No Hit
CAGCGCGGTCAGGGCGTCGCAGGCATCGTTGTCCAGCAGGCTCGGCAATA12.127659574468085No Hit
TTGCAGCGGTGGCGTGGGCGCTGAGGTGCTGGCCCTCGGCCACCGGCTTG12.127659574468085No Hit
GTTCCGCTGCGACGCCCAGGAGGCCGCCGCTCAGGGCCATTTCGTGCACG12.127659574468085No Hit
GTATTACGGTCCGCCCGCTTATGGCCCGGCACCGGTTGTGGTTGGCGCTG12.127659574468085No Hit
TGCCCAGAACAAGGTGCACAGTCTTCGTAAGACCACTCCAATCTTCGGGC12.127659574468085No Hit
GAAGCAGGGCGCAAAAAAGCCGGCCACATGGCCGGCTTTCATAGTTCTTG12.127659574468085No Hit
GTGTTGCCCGAAGGGCTCGAAATTATCGGCCACGAGGCCTTCCTTTTCGC12.127659574468085No Hit
ACCACTTTGGTGAATGCCTGATCAAAGACCGGTTTCAAATAATCGCTCTG12.127659574468085No Hit
ATAGTCGTGTTCAGCGCGGCCACGCAGGGCCACGTGCAAGACGGCGCGGT12.127659574468085No Hit
GTTTCATGGCCCGCTACATGCCCAAGCTGGAGGCGTACTTCCATTACCGC12.127659574468085No Hit
GTCACCAGCAGACCATGCCCAATCGCGAATAGCGTGCCAATCCACACGGC12.127659574468085No Hit
ACTCCAGCGGTCCGGGCAGCGATTGGCTGGGGAACGTGCCCCCGGCGGCC12.127659574468085No Hit
ACCAGATAGTCGATGTAGTCGTCGAGGTCGAACCGGCCGCTTGCCGCCGG12.127659574468085No Hit
TTCCCGCTATAAAACCATCGAATGGCTGAATTACATCGCCACCGAGCTGC12.127659574468085No Hit
CTACAATCCGGATCTCGATCCACCGGGCCATTTCAGACTCTACACAGGGG12.127659574468085No Hit
GCTGCGCAAGGGACAGGCCGCGTTCGACAGGGCACTGGAACGCATCGGCC12.127659574468085No Hit
ACATTGATTGCGGTCGGGTGGAACTGGACGAATTCCGGATCGGCGATGAT12.127659574468085No Hit
TTCGGGACTGGCTCAATGACATGCCTTCGGACACCTTGGCCGAGTATCTC12.127659574468085No Hit
CCTTCAGGCACAACCGCGAGCACTACCAGAAGATCACCGCCAACCTGTTG12.127659574468085No Hit
CCTTCAGACGTCGTGATCATGCCTATTGCGAGCTCAGTGCCCACAATGAA12.127659574468085No Hit
ACCACATTGGTGAATGCCTGATCAAAGACCGGTTTCAAATCATCGCTCTG12.127659574468085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)