FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003645903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003645903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2766
Sequences flagged as poor quality0
Sequence length140
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA160.5784526391901663No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT120.43383947939262474Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA120.43383947939262474Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT120.43383947939262474No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG100.3615328994938539Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG80.28922631959508316Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA80.28922631959508316No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC60.21691973969631237Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG60.21691973969631237No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG60.21691973969631237Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG60.21691973969631237No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.21691973969631237No Hit
ATACAAACGCAGGGAAATCAACATGGTTCAACCGCCTGACGAGTGCTGAC50.18076644974692696No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT50.18076644974692696Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.18076644974692696No Hit
ACGCAGAGTACATGGGCATGACCCCAATACGCAAAATTAACCCCCTAATA50.18076644974692696No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG40.14461315979754158Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGCTGCTGGAGATGTGTCTGAAGGCATGGGGAAACTGGGGTGTGATGCAC40.14461315979754158No Hit
GATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTAC40.14461315979754158No Hit
CATACAGAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCG40.14461315979754158No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT40.14461315979754158No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTAT40.14461315979754158Clontech Universal Primer Mix Long (96% over 26bp)
ACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAA40.14461315979754158No Hit
GTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATT40.14461315979754158No Hit
GAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGCTTCG40.14461315979754158No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTATAC40.14461315979754158Clontech Universal Primer Mix Long (96% over 26bp)
GAGCTGTACGGTCGCACTGAACTCGGATAGGTCTCAGAAAAACGAAATAT40.14461315979754158No Hit
GTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGCCGA40.14461315979754158No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC40.14461315979754158No Hit
ATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAA40.14461315979754158No Hit
AGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCT40.14461315979754158No Hit
CTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCAGATGCGAGCAGG40.14461315979754158No Hit
GTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTC40.14461315979754158No Hit
AGCTAACGGAACAAGCTTTGTGCCATTCGGACCTACCGTAAGCCTATATT40.14461315979754158No Hit
CTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTAGCATTACT40.14461315979754158No Hit
GCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTT40.14461315979754158No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA40.14461315979754158No Hit
CTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAAC40.14461315979754158No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT40.14461315979754158Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.14461315979754158No Hit
CTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGC30.10845986984815618No Hit
GGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATT30.10845986984815618No Hit
TTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTC30.10845986984815618No Hit
GTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGAT30.10845986984815618No Hit
ATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCCATAATTT30.10845986984815618No Hit
GATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGCCAGTATC30.10845986984815618No Hit
CTGCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGCAG30.10845986984815618No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC30.10845986984815618Clontech Universal Primer Mix Long (96% over 26bp)
AGCTAGGACTGGGAGAGATAGGAGAAGTAGGACTGCTGTGATTAGGACGG30.10845986984815618No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA30.10845986984815618No Hit
GGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCTATAAT30.10845986984815618No Hit
GCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACG30.10845986984815618No Hit
GTAGTATAGTGATGCCAGCAGCTAGGACTGGGAGAGATAGGAGAAGTAGG30.10845986984815618No Hit
GGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACA30.10845986984815618No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC30.10845986984815618Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AATCCACCTCAACTGCCTGCTATGATGGATAAGATTGAGAGAGTGAGGAG30.10845986984815618No Hit
TCTTTTACTTCCTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGG30.10845986984815618No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT30.10845986984815618No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA30.10845986984815618No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTT30.10845986984815618Clontech Universal Primer Mix Long (96% over 26bp)
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC30.10845986984815618Clontech Universal Primer Mix Long (96% over 26bp)
GTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGATTA30.10845986984815618No Hit
GGGGATAAGGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGGGCAT30.10845986984815618No Hit
GATCTCCTCATCTTTAATGATGAACTGTCGCCAAGTCAGCTGAAGTCATT30.10845986984815618No Hit
TCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTA30.10845986984815618No Hit
GTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCTATA30.10845986984815618No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTT30.10845986984815618Clontech Universal Primer Mix Long (96% over 26bp)
GAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCTATAATCACTG30.10845986984815618No Hit
GAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGT30.10845986984815618No Hit
GGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATTGTG30.10845986984815618No Hit
GCTGTGTGTTGATTTCATGAATGCGATTTCTGATATGGCGGCGGTCGGTT30.10845986984815618No Hit
CATCAAAACTAGGGACAGGATCAGCTGCTTTTTGTGCTTTTCTGACAAGA30.10845986984815618No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTT30.10845986984815618No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC30.10845986984815618Clontech SMART CDS Primer II A (96% over 26bp)
CTTCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTAT30.10845986984815618No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT30.10845986984815618Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGGATAGTCAGTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAG30.10845986984815618No Hit
GTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTGCCCTTCATT30.10845986984815618No Hit
ATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAG30.10845986984815618No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT30.10845986984815618No Hit
ACTGTCGCCAAGTCAGCTGAAGTCATTGGCAACAGCAATTGAAGTGAAGA30.10845986984815618No Hit
AGAAAGCACATACCAAGGCCACCACACACCACCTGTCCAAAAAGGCCTTC30.10845986984815618No Hit
GTACATGGGACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAA30.10845986984815618No Hit
CTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCT30.10845986984815618No Hit
CACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGT30.10845986984815618No Hit
GTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAAT30.10845986984815618No Hit
CCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAA30.10845986984815618No Hit
ACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10845986984815618No Hit
TAGTTTGATTAGTCATTGTTGGGTGGTGATTAGTCGGTTGTTGATGAGAT30.10845986984815618No Hit
GTACATGGGAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTA30.10845986984815618No Hit
GGCCATGGCTAGGTTTATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAG30.10845986984815618No Hit
CTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTTGTCTAGATT30.10845986984815618No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC30.10845986984815618Clontech Universal Primer Mix Long (96% over 26bp)
GAATGCAGCAATCAATGTCGTCGGAAGATCCTGAATAAATCCTACTGTAT30.10845986984815618No Hit
TCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACG30.10845986984815618No Hit
GGGTATAATTGTCTGGGTCGCCTAGGAGGTCTGGTGAGAATAGTGTTAAT30.10845986984815618No Hit
CTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGG30.10845986984815618No Hit
GGGATGGACGGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGC30.10845986984815618No Hit
ACAATATACTCTCCGGACAATGAACCATAACCAATACTACCAATCAATAC30.10845986984815618No Hit
CCACACCACGCTCGCTTGGCAGTAACGCGAGCAGGGGGCGTCCCTATACG30.10845986984815618No Hit
ATATAGGCCTCGCCCGATGTGTAGGAAGAGGCAGATAAAGAATATTGAGG30.10845986984815618No Hit
CTCGTCAGGCGGTTGAACCATGTTGATTTCCCTGCGTTTGTATAGCCGAC30.10845986984815618No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC30.10845986984815618No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG30.10845986984815618No Hit

[FAIL]Adapter Content

Adapter graph