FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003646103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39
Sequences flagged as poor quality0
Sequence length140
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAGCTGGTGCCAAGTGCTGTCAGCGCATCGACGCGGCGTTCCAGCA410.256410256410255No Hit
GGGTGTCGGTGGCAACGGTGTCACGCGCGCTCGCCGGCGGCCCCGTGAGC37.6923076923076925No Hit
GTGCACACCTGCTCAAGAAGTACAAGCTTGATGGTGAGAAGGACTATCGG25.128205128205128No Hit
ACGTCAACCTGCGCTACGAGGAGCTGACCGGCCGGCGCCCGTCCGGCCTG25.128205128205128No Hit
CAGCCGGTCTTGGCCGGGTCGACGCCGTGCCGCCGGCACGCCGCCTCGAC25.128205128205128No Hit
GCCAGCAGGGCCCGCGCGGCGGCCACGCGGTCGCGGCCCACCGCCACTGG25.128205128205128No Hit
CGTCTTCACGCCGCCTTCAACCTTGATGCCGACGCGCGACGGCTTGCCAT12.564102564102564No Hit
CGCCTGGACAGTGATTCAGCGCTTTCCTTGCGCTCGCTGTAACGATCCAC12.564102564102564No Hit
GGCCTGGCTCGCGTCCCGGATCGCATCCCGGCTCGGGTCCAGGCTCGCAG12.564102564102564No Hit
GCCGGTCTCGAGCATCGCTCGGGTCAGAGCGGGCCGGGTTCCGGGGCTGA12.564102564102564No Hit
GGGCAGGACGACCGCAACATCGTTGTTGAAATGAATACCGCGATGTCCGT12.564102564102564No Hit
GTTGACGCGGCCTTTCAACAAAGCGACAATCTTCTCAGCTTTTTCAATTG12.564102564102564No Hit
TTCCTGATCTGGTCGTCCACCCAGGCCTATGCCGACCTGGCACCGCAGTT12.564102564102564No Hit
CCCAAGCACTACTCGCTCCTGGCGCTTGCCAAGCTGTTTGGCCGTGCCAT12.564102564102564No Hit
GCCGTAACGCGCAAATTTCTCGACGGTGGTATAGAAGCGGTGCCCCACCT12.564102564102564No Hit
GTATGTCGCCACGCGGCTCTACGCGCGTCGCCAGACGTACGACGATGTGC12.564102564102564No Hit
GCTTGACGCTGTCGTACTGCCGCAGGTTGTGCAGCGTCAGGCCGAGCTGC12.564102564102564No Hit
GTTTGTTAACTTAATTGGCCAGAATATGTTAACAATCTGAGTATTGCTCA12.564102564102564No Hit
GTGCGGGTGCAGCTGCGCCGGCGCGCGGGTGGCGCCGATGCCGACCCGGT12.564102564102564No Hit
TCGAGCGCCTGCGCGAGTTCTCGGCCGACCCCGAGACCTGTGCCGGCCGG12.564102564102564No Hit
ACGTCAACCTGCGCTACGAGGAGCAGACCGGCCGGCGCCCGTCCGGCCTG12.564102564102564No Hit
GTCGTAGTGACGTGCGTGGTGTTATGAGTGGCTATGACGGTAGCGCTCTT12.564102564102564No Hit
GTCCGGACATCCGCTGTGCGCGGATTCCGGGATTGACGACGGTTTGGGCG12.564102564102564No Hit
GCAGCGGCGCTGCTGCTGTCTTTGAGCGTTATTCCTGCTGTTGCGCAGCC12.564102564102564No Hit
CCTTCCGACAGCCCGGTCGCCCAGATCGGAAAGTTCAGCGGCTCGGCCAG12.564102564102564No Hit
GCGTACGGTTGCGCCCGGCGAGTGAGCCGGCCACGAGCGAGGCCAGCGCA12.564102564102564No Hit
GTAAAGACTCATCCCATGATTCAGTTACCTCCCACCGGGTCCCTCCCACA12.564102564102564No Hit
GCCATACGCTGATGACCAGCGGCATCTACCGCTACGTGCGCAACCCCAGT12.564102564102564No Hit
CCGGCCGCCAGCAGCGCATCCACCGCAATCGCGCCGCACAGCTCATTGCC12.564102564102564No Hit
CTTGTACGGATGGGCCGAGGCGCGCGTCTGATAGCAGCGTCAGCGTGCCG12.564102564102564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)