FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003646377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58
Sequences flagged as poor quality0
Sequence length140
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGCTGCTGTTTGCAGCGTATCCGCGCGCGTCCATCTCGATTGCCACG35.172413793103448No Hit
GCTAGAGCATCTGCGCACTGGGGAGCTGGATGAGGGCGAACGTCACCGGG35.172413793103448No Hit
GCACCACTGCCGGGGTGACGGAGCGAGATGCCGTCTCTAAATCAGTCAAT23.4482758620689653No Hit
CCTATGCGCCCCTATGCATCGAGATGGCAGCGCGAGAGGAAGCGCTGCAG23.4482758620689653No Hit
GAGAATCCCACTTTACGCCGGCATTAGCTGACCCTGGGAGGATGTTCAAA23.4482758620689653No Hit
GGCCACTGCCTTAGACCGCGCCTCGTCCGGCAGGGGATCGCCCTAACATG23.4482758620689653No Hit
GCTGATGGACAAGCAGGGCCTGGACCCGACCCAGTTCGACAGCCGCGTCA23.4482758620689653No Hit
TCCAAGTACCAGTGCTTAATCCTCTATACCCCTGTATCAGTTTCCTAAGA23.4482758620689653No Hit
GCCATGTCGTAGCAGCGGTTCAGCAGCCAGTTCAGGCCAGCCAGCGTGAC23.4482758620689653No Hit
TTTCCAGGCCGGCCTGTCGGCGCAGGTCGAGGCCGACCAGTCGCGGGCCA23.4482758620689653No Hit
GGCAAGGCCCGCGCAACGTGACCGACGTATCGGCGGATGTGCAAGCCCAT11.7241379310344827No Hit
GTGTAGCCGTGCTCCGTCGTCTGCACGTCGAGCATTAACTGCGCGAGCGC11.7241379310344827No Hit
GCTCAGGCGTGAGCGGCTTGCGCTGGCTGGTTTGATTTCCCATCGTGGTT11.7241379310344827No Hit
GGAACGAACGCGGCAGATCGGTGCCCGGGGCGGTGAACGCGGTGCCGTCC11.7241379310344827No Hit
CCTGATGAACCGGTGATCCGCCGCGTGCGGCAGGAAGTATTTGACGATGA11.7241379310344827No Hit
CGTTACCCTGAAACCCGGTGACAGCCTGCTCGTTCCGGCTGGCACCACAC11.7241379310344827No Hit
GAGTCGGACAGGGCCAGCAACAGGCAGTTGTGCCGACGCAGATCGTCGGG11.7241379310344827No Hit
GTATGGTTTTTCTTGGGGTTGCCAGGAAACCGCTTAGTTTCCAGAAACTA11.7241379310344827No Hit
GCCCAGCCTACGCTGGCGAGCCAGTGCCCACGCTGGCCGCCATCGCGCGC11.7241379310344827No Hit
GCTCTGGCTGTTGCTGCGCGCGCTTCGACATCGTCACGCCTCCTTCGACG11.7241379310344827No Hit
TCGCCGCCACGGCGCTGCTGCTCCTGCTCCCCCTGATGCTGCTGGTGGCG11.7241379310344827No Hit
CTCCTGGCGTGCGAATGAACAATGGGTCTTGCAGATACTCCCGCAGTCGA11.7241379310344827No Hit
CGTTTACATCGACCTGATCGGTTGTGCCGGGCACGTCTTCCGTCGTGATG11.7241379310344827No Hit
ATAGAATCGTTCTCAGAAAGTGCTTAGTGACGTGTGCGTTCAACTCACAG11.7241379310344827No Hit
GGGCAACGACTGGACCAACGTGCGCGCACTCGGCTCGCACATCAAGGGCA11.7241379310344827No Hit
GGCTGGAACAGCGGGATGGCGGCCATCTCGGCCAGGAAGGCACGGGCCTG11.7241379310344827No Hit
GTGAAATGCTTGCCCGCCCACAGCGTGCGCCAACTGCTGCGATCCAGCCA11.7241379310344827No Hit
ATCCCGTCATCCTCCACCATTACCTTTTGGTTACCAAACGCAAGCATCGA11.7241379310344827No Hit
GCGCTCCAGCCGGTCGTACTCGATGCCGGTGCGGTCGACCAGCTCCTTCA11.7241379310344827No Hit
ATGCCGGCATGCCGGAATCGTTCAACGTGCTGGTGAAGGAAATCCGCTCG11.7241379310344827No Hit
CTTGTAATCCCAGCTATTCAGGAGGCTGAGGCAGGAAGATTGTTTGAGCC11.7241379310344827No Hit
GGGGCCCCGTTTTGGCGCAACAGTCCGATACAATTGCTGTCGTATCGAAC11.7241379310344827No Hit
CCACAAAGCTGCGGATCACCTGGGCAAACTGCTGCGCACGCTGTTCCTGT11.7241379310344827No Hit
GAGAACGGGAGCGGCATCGTACCGGCTAGAGCTTGAAACGAAACCAACCT11.7241379310344827No Hit
GTCTCAGACCTGAAACCAGAATAGCCATGACATTTGTGATGATATGCAAG11.7241379310344827No Hit
ACAATGAACTTCAAATGTGTAGCACTAATCACATGTTAGCTTACCTTTCC11.7241379310344827No Hit
GTATCTGGCGGGCGATGGCTCCATCCGCGACAAGGACACCGGCTACTTCA11.7241379310344827No Hit
AGGTGATTGCACGCATTGCCGACGGGTCGGATTTCCTGGAGTTCAAGCGC11.7241379310344827No Hit
GTGTCGGACAGGGCCAGCAACAGGCAGTTGTGCCGACGCAGATCGTCGGG11.7241379310344827No Hit
CGACAACCCGGCGCACATCAAGCAGGCCGTGCATCAGGCGCGCATCGAGG11.7241379310344827No Hit
GTCACGGCATCGTCATGCGCGCTTTCGATACTTCTTCGCTTCTGAGCCCC11.7241379310344827No Hit
AAACAGAGCTTATGAAAAGACAAAAAGGAACCTCAAAAATGGCGTTCTTA11.7241379310344827No Hit
ATCGAGAACACCACGCGTGTGCTCGCGATCGAGTTGCTGGCCGCCGCGCA11.7241379310344827No Hit
GGTTTACCTTTTTTCTCATAGTACTTTAGTGACTAGTTTTTACTTGACAA11.7241379310344827No Hit
TGTGAATCCTGAGCATTCGCAAGTTGGCGGTAAAAAGAAAAATCATCCCC11.7241379310344827No Hit
GTTCCTGGGCCGGTCTCGTCGGACCCGGGCTTGCTGTCGATACCGACCGC11.7241379310344827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)