FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003646378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58
Sequences flagged as poor quality0
Sequence length140
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAGCATCACCCACGTATGCGCATCGGCGGGCGGATGCGACAGGTTGG35.172413793103448No Hit
GCGGAATCCCATCCCGGTCTCATTGCGGTACAGGCGGGTCAGGGTCCGGG35.172413793103448No Hit
GAAGTAAAATAGAGAGATTTTGTCAATAGCCCCAATTCTTCACTCCTCTC23.4482758620689653No Hit
GGCTGAGCGTGGGCAGATGGCCGGCGCGGGCCGCGGCGATGCGCTGCTCG23.4482758620689653No Hit
ATCCTGACCCTGCCCGGCGACTTCTCCAACCAGGCCGGCTGGGACGCCGC23.4482758620689653No Hit
ATGGCGAAGAGCATGCTGCCATGGTCGCCGGGGCGGGTCTGCACGTGCAC23.4482758620689653No Hit
GCGTCGAAGCGGCCTCGGGCGATCCTGGCGGCAACATCCGGCGTGTTGCA23.4482758620689653No Hit
TGTCTGCAGCGACAGAGGTAAAGCTGGAAAGCCTGGTCGAGCTGCTTAAG23.4482758620689653No Hit
CTTTGGGCCAAGCAGGCATGGTGCCTCCCGCCAGTCATCCCAAAGTGCTG23.4482758620689653No Hit
GTGGTGGCGCTCATCTTTGACCAGGAAGAGGCCAGCGATGCGCTGTTCGA23.4482758620689653No Hit
GATCTGCCCTGTGCAGGGCTGCAAACCACCACCCTCCATGGCCCCAACCA11.7241379310344827No Hit
CTGCTTGGCTTCGTCGCCATCGGGGCGCGAGCGCTTGAGCACCACGAACG11.7241379310344827No Hit
AAGATGGCGTGGCGCTTGGCGGAATTCATCGTCGGGGCAGGGGTCAGGGT11.7241379310344827No Hit
ATCACCAGGTTCGTCAGTAGGGTCAGCGATCCGGAAATCGCGATCATTTC11.7241379310344827No Hit
TTCCGGCACAGCTTCGCGCGCCGCAGCCAGCGCATCTTCGGAAAACGACG11.7241379310344827No Hit
GGGCTGCGGATGTTGCACGGATCCTTGAACGTGATCCACGGATGGCCGGT11.7241379310344827No Hit
GTGCTTGATCATGCCGGCCTGTTCCGACGCCTTGCCGACGATGAAACCGG11.7241379310344827No Hit
CACTAGCGAACACGCAGTAAGGCCAGCTCTATCTTCAAAACGCACTCCTT11.7241379310344827No Hit
GCCTGGCGCTCACGCAGGAAGGCGAGCGCTATCTGCAACACGCACGCCGT11.7241379310344827No Hit
GTGAAAAGGGAGGTTTCACTCTTTGAATTGAATGCACACATCACAAAGGA11.7241379310344827No Hit
AGGGATATCTCAATTATTTCTTTGTCGATGTCTTGTTTTTCATGTAGAGA11.7241379310344827No Hit
NCTATATGTCGCGCCAGCATTTGCAGGCGCGCGCGCTGCGCGAGCGTCTC11.7241379310344827No Hit
GACATTTAGTAAGTGCTTATTGTATGCCAGGTACTGCGGTTGAATCCACG11.7241379310344827No Hit
GAGGGACTACACGCTGGCTTTTAAGTTGGCAGTGGTTGAGCAGGTGGAAA11.7241379310344827No Hit
GCGCAGGATCCGGCCGAGCGGTGTCACGCGCGGGTCGTGGGTGAGCTTGT11.7241379310344827No Hit
GGCCGAGATGGAGAAGCTCATCAAGCTCAAGCAGGGCGATGTCTTCTCGT11.7241379310344827No Hit
CTGCTCGACGAAGGCCACGAGGTCGTCGTCGTCGACCGCCAGCCCGATGC11.7241379310344827No Hit
AAGCTGGTGGACGACACGATTGCCGGCGTGATGAAAAGCGGCGAGGTCAA11.7241379310344827No Hit
GGCCGATCTTGATCGCGTCAAACTGCTCTTCTTGCTGTACCTGACGGAAT11.7241379310344827No Hit
GTCTTGTAGATTTATATCTTTAGCCCCGACCGCTCTCTAACTTCCGTGTG11.7241379310344827No Hit
ATGCTGATGGGCGTGCCCAACCTGCCCGACGCCAGCGTGCCGGCCGGCGC11.7241379310344827No Hit
GCCTATGTATTCAGCAAGGGATGACCCATTCGGGCCGGGTTTCCCCATTC11.7241379310344827No Hit
ACTTTCTTCTGCTGGAAAAAGAGCTAAGAATTCCTTGACTGCCTCAAAAC11.7241379310344827No Hit
GGCACAGACAACGCCGTCGCCCAGCGGCTCTACGCGCGGCTGGGCTTCCG11.7241379310344827No Hit
CGTTATGCCTATGTGCGCGGCAGCGGCTTCGGCGAGAACGGCGCAAACGG11.7241379310344827No Hit
CGCTAAGGCATAGCCGAACCTGCCAAGCTTGCTCCACCCTGTAGTGACGC11.7241379310344827No Hit
ATCGAATGAAGATGGGATGACCTGCCGGCCGCCGCAGCGCCGCTGCGTCA11.7241379310344827No Hit
AGCCACGCGGGCGGGATGCCGCACGCCCCAGCTGAAGGCCTGCATTGCGC11.7241379310344827No Hit
ACAGAATGCTGTGAAGAGGGGGTTTTATGCAGCAGGGTATCTGTCCTATG11.7241379310344827No Hit
GATCTGAAAACTGTCAATAAATGAAGACTTGATTGTGCTCCAGGTCACTC11.7241379310344827No Hit
AATGACGGGTAGTCGGGTTTTACGTCTAACAGCGCAAGTTGTTTTCCAAT11.7241379310344827No Hit
TCGCTGGGTTGCCTGCTGCGAGCGGGAACTTGAGCCGCTGGGCGTCTCAC11.7241379310344827No Hit
GCTCCATCACCTCTTCCCCGCTGGCCGCTTCCCCCGCGACTTCGATGTTC11.7241379310344827No Hit
GCCACCACAGGCAGCCAGCGACATCGACAAGAAAACAGCAAGCGGCAACG11.7241379310344827No Hit
CCTTGATGTGCCTGGAGCCCTCGGCACTGTCCACCAACAGTCCGTCACGG11.7241379310344827No Hit
AAATGTTAATGGGCTATTCCCCCGGGGACCGGATTCCAAAAATCTCTGAG11.7241379310344827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)