FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003646447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58
Sequences flagged as poor quality0
Sequence length140
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTGGAAGGCCTTGGGCGCCAGCTCGATCCCGATCTGGACCTGTGGAAG58.620689655172415No Hit
CTCCAGATACATGGATCTCGTCCCATTTGCGATCCATGCCTCCAAAAACG35.172413793103448No Hit
GCCCTTGCCATGCTCGCCGGCCCGGGCTGCTTCGACGGCCGCGTTCAGGG23.4482758620689653No Hit
CTGCCACAGGCCGTCGAGATGCGAGAACGGCCCGTCGACCAGCTCCATGC23.4482758620689653No Hit
GGATTGCTATGTAATTGATTCGAATGGAATGGAATCGAATGGAATGCAGT23.4482758620689653No Hit
GTTCACGAAATGGCTGGGCGCGCCGCGGCTGATGGTGGCCGGCATGCTGT23.4482758620689653No Hit
ATGATACATGAGCTGCTCGCCATTGCTCTATCTGTTTCAACGTAAGTTGC23.4482758620689653No Hit
GGCGCAGGCGCTGGCGGCGGCGGTGCTGGCCGACCCGGCCCGCGACGGCC23.4482758620689653No Hit
GATTGGAAGAACACGTTGAGCGCCCGGTTCCAGATTTCTGCGCCCGTGTC23.4482758620689653No Hit
CCATGAGACTGATATCGGAAATGTAGGCGAGGATCGCACGCTGCACAACA23.4482758620689653No Hit
ATTCTAAGCTCTCTTGTGGTTGTTGGAAGGACTTGATTTTGACACTGTTG23.4482758620689653No Hit
CGATACAAGCCGTCGACTGGTGCGGATGTCATGTATGTGGTGGGCGGATT23.4482758620689653No Hit
TTCCAGGCCATCTACAAGCGCTGGCTGCCGCAGGACATCCCGCCGCGCTG11.7241379310344827No Hit
ACCCGGTTTATAATGATCTGTTTGATGGCTTTGCGCCTGCAGCTTACCAC11.7241379310344827No Hit
TCCCTGACCCCCGTGCTTCCTGAGAGGGAGAAACCTCCCAGCAAAGGTCG11.7241379310344827No Hit
GCAAGGCGCTCGCGGTCGCCGGTAAAGGTGCCCCAGGTGCCCCGCCCGAA11.7241379310344827No Hit
GCTTGGACGTGTTGGGGTTGTTGCCCGTCTCAGCCTGGAAGTAGCGGTCG11.7241379310344827No Hit
CCCCTACTCCACCACGGTCTTCTTGCCGTCGAAGACGTCGTGGTCGATGC11.7241379310344827No Hit
GTGGCTGACCTGGCTGCCATTGGCAACAACGACACGGTCCTGGAACCCAG11.7241379310344827No Hit
ATACTGATCTGGTCGCCACGGTAGCGCATGATGTGGTTCCAGATGGCCTC11.7241379310344827No Hit
CCCCGGATAGGTTCGGAGCCACCGTGTGCAGATGTCAGGCCGCCATCGTG11.7241379310344827No Hit
CTCAAAACCTATTGGCACAATGCTTCGACGTGAGGAGGGAGGCGGCAGTG11.7241379310344827No Hit
GGCCGCCGTGCGCAGCGGCCACATTGCCGGCGCCGCGCTCGACGTATTCC11.7241379310344827No Hit
GTCCGAGGCTGCATGAGGTAAATGGTAAAACGTTTCTCCGCCGGACACAA11.7241379310344827No Hit
GCGGAGGAAGTCGAGGGCGGCGTCGGTCGCGTCGACGGCGGAGCCGGCTT11.7241379310344827No Hit
TGCGAGCTCCGGTCAACGAAGCGACCGGCACCGCCGGCCAAAGCACAGTC11.7241379310344827No Hit
GGCATTCACGGCCAGGAAATCGGCTCCCGTCTCGCCCACCGTCGTGGACA11.7241379310344827No Hit
ATCGTGCCATTGCACTCCAGCCTGGGTAACAACAGCGAAACTCAAAAAAT11.7241379310344827No Hit
GTGGCGAAGGCTGGCGCCGCCAGCCCCAGCCCGGCACGGTGGACATCACC11.7241379310344827No Hit
AGCGTGCGCCCCCTGAACGCCCGCTGATTGCACGGAGGCTAGATGCTCAC11.7241379310344827No Hit
CTCAAAACCTATTGGCACAATGCTTCGACTTGAGGAGGGAGGCGGCAGTG11.7241379310344827No Hit
GTCCAGTTCGGCCTCGGCAATGAAGTCGAGCAGCGTTTGGAACTCTTCCT11.7241379310344827No Hit
ACCGAGAAGCCCGCGCAACTCGTGGTTACGCCCGAGACGGCCTTCCCGAT11.7241379310344827No Hit
TTCTCGACTTCGTCCGCCTGGGTTTTCCGGAAGCGAATGGGCGGCTGGAC11.7241379310344827No Hit
GTTGGCCGCCTGCGTGCCGGTGCTGGTGTGGCGCACCGTGGCCGCGATTT11.7241379310344827No Hit
CTTCGGCAAGGCCCACCGCGCCGAGCCGCGCCTGGCCGTCATCGCCTACG11.7241379310344827No Hit
ATGCCCTGGCGCGAGCGCTCGAAGGCATCAACCAGTCCCGACGGCACGCG11.7241379310344827No Hit
GCCCCACCCGGCGCTGCGCAAGGCCGCGTTGCCCGGCTATGCGGCGGATG11.7241379310344827No Hit
CCACCTACGTCGGCATCATGATGTGGAAGCAGGCTGTCGAGAAAGCCGGT11.7241379310344827No Hit
GGAGCACCTTCTGCAGGCACACCAGCTGCAGGTTCACGTCAGCACGGAGT11.7241379310344827No Hit
GGACGCGAGCTCGACTCTTTGGCGGACGTCATTTCCTTTGGCGTTGCACC11.7241379310344827No Hit
GCCACACGGCCGCCGAGTTCGCGGAGTACACCGACACGGCCCACGAATTC11.7241379310344827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)