FastQCFastQC Report
Tue 10 May 2022
EGAF00003646522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1151684
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCAGGACTGAGTCAGGACTCCCACGCTGGCCAGGCAGCCCTGCTCACA13280.1153094077889421No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA12560.10905769290881874No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT12380.1074947641887879No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC12290.10671329982877248No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA12260.10645281170876734No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT11840.10280597802869537No Hit
TCATAGGGCAGCTCGTCCTCTGTGAACTCCGTGAACTCTGACTCTGTGTC11740.1019376842953449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)