FastQCFastQC Report
Wed 8 May 2024
EGAF00003646539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513179
Total Bases74.9 Mbp
Sequences flagged as poor quality0
Sequence length146
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTATAGAGCTCACACCCATACTCCCAGCTGGGACCCAGCCTTCCCTG6380.12432309194257754No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG6090.11867204230882403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)