FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003646767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42
Sequences flagged as poor quality0
Sequence length146
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACCGCAGGGGATCGCCTGTTGCGCGAATTCGGCGCGCGGCTTCAGA24.761904761904762No Hit
GCTTGACCGACTGCTGCAACCCCTTCACCCGTAAGTCGATGAGACCTGAG24.761904761904762No Hit
ATCATGACATGTCCCAACCTCGCCCACTGCTCTCTCCTCCCGAAACTGAA24.761904761904762No Hit
CGCTGAGCGCCCTGAGCGTACGCATCAGCTGATCCAGGCTGCCCTGCTGT24.761904761904762No Hit
TGCTGGGGCAGGCCACGAACAGCAGGGGTTCGACATCGCTTTCGGGGACG24.761904761904762No Hit
CTGGCCGCCGGCGGCCTGGAGCCGCCAAAGCCACCAAAGGAGTCGGTACC24.761904761904762No Hit
GGTCGATGACGAACAACGGCGCTTTTACGAAGACTTGGGTCGTTTCGAGC12.380952380952381No Hit
CCATCACGGGCTGTACGTCAGCGTCCATGATTCGAAAGGTGAAACGCTCT12.380952380952381No Hit
GTTTCGACCATCTTTCGTCGCTGCTGCTCTTGGTGTTGTGGTCGGCCCCG12.380952380952381No Hit
GGATTTTCGGTTGCAGCGGTTGAAGTCGCCATGCGTGAAGCGTCACCTCT12.380952380952381No Hit
CCTCGGAGGCGGCCCCCTCGTTGTCGGCGCTGACCTCGTCGGCCCCCTCG12.380952380952381No Hit
GTACCAATTGTCCCACGACGCCTTCGGCGATCACCGTGTGTCGTCGTGAC12.380952380952381No Hit
GCTCAGAGGCTTCTCTTCAGCCTCCTTGCTGGTGAAGACGACATGGGTCA12.380952380952381No Hit
AGATGCAGAGCAGGCAGCTGCAGGAAGATATTCGCAACCATACCAATCAG12.380952380952381No Hit
AAGTCTTCGTAAAAGCGCCGTTGTTCGTCATCGACCACTCGGCTGGGTTG12.380952380952381No Hit
GTAGTAGTCGGTGAGGCCATCGTAGCCATGGACGACATGGCCTTCCTCCA12.380952380952381No Hit
CGCCTACTTTGGCGGCGTGCCGCGCGAAGTGCTCTATGACAACATGAAGA12.380952380952381No Hit
GAATTTGTCCAGCCGGGTTCAAGCTGCCGTCTACGCCGTCGAACAGGGTC12.380952380952381No Hit
AAACGCAGGCAACCGAAGTCGACCGGCAAAGTGGCGTTCAGTTCGCGCTG12.380952380952381No Hit
GATAGCTGGTGTTGGCATGCAGCGACGCGAGCACCAGATGTCCCGTGAGC12.380952380952381No Hit
GTCGGAATTTCAAGGGGCGTTTGACGCAATGCTCGAATCGATGGGCCTGA12.380952380952381No Hit
ATCTTGTTGGTGGTCCAGCCGACGTCTTCGGCGCGCATGATTTCGTAGGT12.380952380952381No Hit
GCAGCAGCGGATCCCAGACGGGGATTGGGGTTTGGTTTTGCGACATACTT12.380952380952381No Hit
GTCCATAACTGCGACATCCACCCGGACCTTGGGCAAGAAATCGACCACGT12.380952380952381No Hit
GGTTCGTTGCCACCGACGCGCGCAAGAATTGCGGCTGCTGCGCCACCCAT12.380952380952381No Hit
GAGCGTGATCCAGTAGAGTTTTTACTCGCGGTCGGGAAGCCGGTCGAGGT12.380952380952381No Hit
GGCGCTAGACCGCAAACTGGACGCGGTCAAAGCTTACGCATACCGCGTGA12.380952380952381No Hit
GCCTGGAACTCCAACAAGAGATAGACATAGAGCCAATGGTTCTCGAAGCG12.380952380952381No Hit
GTATGGACCAACACCACACCGCGTTCGGTTTTCGCCGCAGCGATCTTCTG12.380952380952381No Hit
CCGTACGGATCATGTCGCCGCCCCCTTGATAGGGCGGCATCGATTCCAGC12.380952380952381No Hit
CACACGATGCCCCCAAGGAAGGGGTGGCGGAATCGCCTTCCGGTGCGCGG12.380952380952381No Hit
CTTGTACGCATCAGCGATCAACGCCCCGATCCACAGGAAAAAGACGCGAT12.380952380952381No Hit
CGTTACAGGTGATCAGCGCCACTTATCTGACGATCCTGATCCTGGCGGGT12.380952380952381No Hit
GTGGTTGAAATGGCTGGGTTGTCTCTGCTCGACCGCTGGTTGGGGCGCAA12.380952380952381No Hit
ATCGCATGGGGCGCGTAGAGGGGTTCGCGGTGGCGGCTGAATTGACGAAT12.380952380952381No Hit
TTGCGTCACGTCGAAATTTAGTCGCGTCCCCTCAGTGCATGCGCTTCGAT12.380952380952381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)