FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003646769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42
Sequences flagged as poor quality0
Sequence length146
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATGGCGTGTATCCCCAGACGCTCGAGCAATGGCGCACCGCCGCCCTG49.523809523809524No Hit
TGCTCCTGAGTGGTGAAAAAGCGAGTAGCGATCTTATCAGCAAACTGCGT49.523809523809524No Hit
GCCAACCACCGCGCGGCGCTTTCCCCGCGGTACGGTGCGAAACGCCGCAC24.761904761904762No Hit
AAACGCAGGCAACCGAAGTCGACCGGCAAAGTGGCGTTCAGTTCGCGCTG24.761904761904762No Hit
GGCAAAAACTGAGCCGCGGTGTCGATGCCACACTTCCGATTCAGCTAGCC24.761904761904762No Hit
GTGTGTCAACCGTGCGTTCGAAAGCTCGCTTGCCGAAGGGCTCCTCTTCG24.761904761904762No Hit
CAATTTCGTATCGATCTTTGATTTGACGAAAGCGTGCTATCAAAGCCCGG24.761904761904762No Hit
CTGCGAGACCGTAAGGAGGATTTTGTCGGAGAAGGAAGTGCAGGTCACTG12.380952380952381No Hit
CGAGCAGTTTGCCGTTCCCGAAACAACGCTCCTGGAGACCTACAACGGCC12.380952380952381No Hit
CCATCACGGGCTGTACGTCAGCGTCCATGATTCGAAAGGTGAAACGCTCT12.380952380952381No Hit
AGGTAGAGGTAACCGACCGTTTCTCCCGCTTTGTCGAGCCGGTAGGTGCG12.380952380952381No Hit
GTACTCAAATCTTGATGACTTGAAGCGTATGAGTCGGATGATTGATGACA12.380952380952381No Hit
TTTGGCGTGACGATCGACGTGGGGGCGGAGATCCTTTTCCCCAGCGGCTC12.380952380952381No Hit
ATACTCGCCGATGAACATCGCGCAGATGACCGTGTCGCTCTTGGCGGTGA12.380952380952381No Hit
ACCAGGCGCTGCGCCCCTACGGTCTGACCTTGGGCGCTATCACCGCGCTC12.380952380952381No Hit
GGGTCGGCCATCGCGACGACGGTTTTCCCTTTCCGCCGCGAAAGGGGAAG12.380952380952381No Hit
TGATGGCACCGGTCACCCGCACCGTACGGCGAAACACCTGAAACAAAACC12.380952380952381No Hit
GGGCGGTGGCGCGCTTACCCGGGAAAAGATCGTCGCGGCGATGAGCGAAC12.380952380952381No Hit
GGAGATCCCCGCCTGGCGGTGCGCCTTGCCAGACGCTATGCCGCCGCTGC12.380952380952381No Hit
CGCTGAGCGCCCTGAGCGTACGCATCAGCTGATCCAGGCTGCCCTGCTGT12.380952380952381No Hit
CCACAGCCGTTCTGCGAATGCAAGCAGGAGCCAAATGAGCTGCTGCGATT12.380952380952381No Hit
ACCAGGCGCTGCGCCCCTACGGTCTGACCTTGGGCGCGATCTCCGCGCTC12.380952380952381No Hit
GAGTAGCTGATGACGCGCCGCTCGCCGTCTTCACCGATGCCGATCAGCGC12.380952380952381No Hit
CAACCCCCAGCGCCAAAACTTCCCCCCGAAGTGATCGAAAAGACTCGACA12.380952380952381No Hit
GCTGTAAAACGGGCCTCGGTATTGTTCGATAAAATCGGCGATAACTCGTC12.380952380952381No Hit
TTGATGCAACAGATGCTCGATCGCTATCAAACCGGAATTCAAATCGTGCG12.380952380952381No Hit
ATCGTGTGGTCTGTCTCCTCTCTGGCGGGGGTTCGGCGTTGTTGCCGCTT12.380952380952381No Hit
CCGTGACCCCAACCGCATGCCATTGCACCCGCCATTGCCGATCGAAGAGG12.380952380952381No Hit
GGTTTCACCGTCGGCTTCCGCGACCGGGAGCGGTTCGTTGGCCAAGAACT12.380952380952381No Hit
TATAGCGGGTTACCGGCGGAAACCAGTGACGGCGGTTGCTGGCGTTGATC12.380952380952381No Hit
CCATGTCGGCGCCGTGGGAGACGTCGAGCAACCCGATCACCGTGAGCGGG12.380952380952381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)