FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003646770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003646770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42
Sequences flagged as poor quality0
Sequence length146
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGCGGTGCGAACTCGATCTCCTCCTTCCCGCACCCGTACCCCAAGCC49.523809523809524No Hit
CTTCCAGGCCGATCATGCGTCCTCGTCCTTGGGGAAGATCGCTTCGAGCT49.523809523809524No Hit
GCCCACCGCACGCGAACAGCGACGCAACCGCGACACCCACTACCCGTTTC24.761904761904762No Hit
AAAATGTTGCAGTGCAACAATCCATACTATAGCGACCCATCGGGAGAAAG24.761904761904762No Hit
GTACGGCAGCTGTTTGCCCAAAAGAAACTCGGCGCGACGCAGCGGAGTGA24.761904761904762No Hit
GTGCGGTTGGGGCCGTTCAACCGCGTCGAGGGGGACCTGGAGGTGACCCT24.761904761904762No Hit
TGTCGAGGCCGTGCCCTTGCCGCAGGATGCCGACGATGTCGTCGCCGGGC24.761904761904762No Hit
GGTAATCCCCCGTCAACCGGATCGTCACCGGCAATTCGGCATAGAACTCT24.761904761904762No Hit
GGTCGATGACGAACAACGGCGCTTTTACGAAGACTTGGGTCGTTTCGAGC12.380952380952381No Hit
CGACGAAGCGGCGGTGATGCGCGCGGCGTCCGAGGTGGTGCGCATGGGGA12.380952380952381No Hit
CTGGATGGGTCGTCCAATATCGACGTCAATATCTCGGTGGGAACCATCTT12.380952380952381No Hit
TGCCGGTACTGCTCATAGAGGCTCAAGAAGCGCTGCGTGTCCCCTTCGGC12.380952380952381No Hit
TCATGGGCGTGCCAGACGCTCTTCTGGCTCGATTTCTCTGCGCTGGAGCG12.380952380952381No Hit
GCAGCGACGGCGGCAGAATGCTCGCGCCAGAAGGGGGAAGCGGCGTAACG12.380952380952381No Hit
GGTGCACGCTGGCTGGGTTGACGAGGGGCAATTGCACAGCGCGCTCGCAC12.380952380952381No Hit
GGGGGTGAGCCCACTGGAAGCATGGGACATCGCGTTCGCCAGCGAAAAGC12.380952380952381No Hit
GTTCCGCGCTGTGTCCGCGATTTTGCGGCGCATCTCGGCGAATCGTCGGT12.380952380952381No Hit
ATTCCACCCCGCTCTGGCAACCCGGCCCACAGCAACGACAGCACAGCCAG12.380952380952381No Hit
GCCAACACCGTTCCCGGCTCCTACCAAAACGTCAGATGGCCTCGTCCTCG12.380952380952381No Hit
CCTCAGTGGTGCATTGCGCGCTGGCAGATGCGGGACGACGCAGGTGACAA12.380952380952381No Hit
GGTTAGAAATCGCTCTGTGGAGCATAAGAACATCGCCTCGGACGCTGCCC12.380952380952381No Hit
TTTGTGAAGCGCGTCGCGCGTTCCTCTGCCGCTCTGCCGCGTGGGCGGTC12.380952380952381No Hit
GACAAACCCTTCCGCTTTTCCTTCGTCGCCCAAAAATTCCTGGAGAGCAA12.380952380952381No Hit
GATTCTGGCAGATTCTCAATGATCTGCTGCCGTTCGTGGTGCTGATCACG12.380952380952381No Hit
GGAGCACATGCGCGGCCTGCATCGCGAAGATGCCGTTCGTGACCACGCCG12.380952380952381No Hit
GCGCGGGCGAGCGCGGCGTGCCACTGCGCCACCGTCTGGCTCTCTCCTTC12.380952380952381No Hit
GGCGGCGACGTCCAAAGCGTGATAGGGCAGCAGGTGGCAGGTATTGCCTT12.380952380952381No Hit
TCTTCACTTGCTGCCCTTGGCATTCGCCACTGGACCACCGCGCCAACGGC12.380952380952381No Hit
GTGCGCCACAGAGCCCTTTGTCGGTCGTGACCACGATCAATCCCACCCGT12.380952380952381No Hit
AGCATGAACCGTGTGTGATGTGCCGTGTCCATGGCAACAAGGATGTCCAG12.380952380952381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)