FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003647238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length146
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCGTCGTTGGTACATTCGTCTATAGCGGAACCAAACCCAATGGTGC316.666666666666664No Hit
GCCATGGCCGACCAGAACCAGAGCATGGCCGAGGCGCTTGCCGCCCGGCT316.666666666666664No Hit
CAGGCCGCCCTGTGGCTCTCGATCCGCACCTGTCTGAGCTCCACGGTCGT211.11111111111111No Hit
AAAAAAAGTCCTCACAGCTCACTTAGAGTCTCGTAAACAACTGCTAGAGC15.555555555555555No Hit
AAATCGGACCTTATTACTTTGATGGTTTAATGAGCTTTTACAACAACTTT15.555555555555555No Hit
GCGCCAGCGTCGCCGTGCTGCCGATCGGCGCCGATGGCGAGCTGGGGCCG15.555555555555555No Hit
GCACATGCCAGCATACCTGGCTGCTTTTTGTATTTTTAGTAGAAACCGGT15.555555555555555No Hit
CTGGACTTCTTATGTGAGGACAATAAACTTTAGTGTTTTTCACGTTTTTT15.555555555555555No Hit
CCCAGTGCCTGCGGTGCAAGCGCGGTGCCCTGGGGGCTCGCGAAGACCAG15.555555555555555No Hit
ATCTGGATGTGGGAGGTGAGAAAGAAGAAAGTACCAAGGATGACTCTCAA15.555555555555555No Hit
TCCATAAAACTGTAACTAAGTGAGGCTCTCTCATTGGTTTATACTTCAAT15.555555555555555No Hit
ACCATGCCCAGCCTCATGTTTTAACCAACTCAAATATGATGCCGTCTCCT15.555555555555555No Hit
TCTGTGTTCTAAACATCCAGGTAATCACTGAAACAGCCCGATGGCTGTGC15.555555555555555No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)