FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003647241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCATCGCCTTTCCACCGGCGCCGTCGCCGCCTAAACCTGCGCGATGAG617.142857142857142No Hit
CCGTCAGGATCAGGGGATCGTCGCCGGCGGTCATCTTGCCGCGCAGGCGG25.714285714285714No Hit
CAGTTATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCG25.714285714285714No Hit
CTTCTAGGTTCCTCCACCTCAAAGAGCATCACAGGTTTGTGAATCTACAG25.714285714285714No Hit
ACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGT25.714285714285714No Hit
CATGCCTTTCAATGAGGAATAACTCTGCCCATTAGTCGTCATGGCTTCAT25.714285714285714No Hit
ATCTATTCTTGCCACATCAAGGGATTGTTATTCCTTTAAAAAAAAACCAA25.714285714285714No Hit
CATACAGACAGTGCCTCATTATACTGCCTCCTCCAACTCCTGGCCTCAAG12.857142857142857No Hit
CGCTCGCGGGCCCCGACTGTCTGCGCTTCACGCTCGACGAGACGATTGCG12.857142857142857No Hit
GCTGTATCTCGACCAGTTGACACAAACTTACAATTAGGTCTGCAATCATG12.857142857142857No Hit
CGCTCGCGGGCCCCGACTGGCTGCGCTTCACGCTCGACGAGACGATTGCG12.857142857142857No Hit
GTGCCACTTTTCTGCTTAAAACTTTCCAGTGGCTTCCATCATGTGGAATT12.857142857142857No Hit
ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG12.857142857142857No Hit
CGTGTGGAGCTAACCACCCTACAGCTTGCTTCTGCTCATCAAGGAAATCA12.857142857142857No Hit
CCTGGTAACTATTCAGCAAATTATGGGTGTAATTATGGGTTTAACGTCTG12.857142857142857No Hit
GAAGATCGGCCCGAACACGTCTGCGGTGAAGATTTGCAGCAGCAGGCCCT12.857142857142857No Hit
CTTCATGGTGGTGGAGTTCTTCTTCCAGCTGCTGGGCAACTTCGGCCTGG12.857142857142857No Hit
AGCACGTGATCTCTAGCTCTGGAGCAGGCAGGTCTAGGTCGACTTGCATC12.857142857142857No Hit
TCTCCATCGCCTGTGCAATTACTGGCGATTCCTCCGGCACTGCAAGGTCG12.857142857142857No Hit
CTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAG12.857142857142857No Hit
GGTTAGGAGGAGTCAGTGCCAGAGGGAGGCAGCATGCCCTTTCTGCTCTG12.857142857142857No Hit
GCATAACAGACTGTCTGCATAAAAATGCTAAAGAAGTAAACCAGGTATAT12.857142857142857No Hit
GCTGCCAAAGAGTCAAACATTCATTACACGATGATGCTGCTGACAGTGGT12.857142857142857No Hit
GAACACGCCCCGTCCGCCCAGCGCCTCGGTGACACGGCCGGCGATGTCCT12.857142857142857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)