FastQCFastQC Report
Tue 10 May 2022
EGAF00003647457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23382
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1390.5944743820032503No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1190.5089384997006243No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT590.2523308527927466No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT370.158241382259858No Hit
ACCTGGGACTTGATCCGAACAACATCCTCAAGCGGCTGGGTGACGGCTTC310.13258061756907025No Hit
GTACATGGGACATCGCCACCGCTGATGCGACCACCAAGGTTGTTGATGTT310.13258061756907025No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG300.12830382345393893No Hit
GTACATGGGAATGCCGCAAAAGATTCTCGAAAAATCGGCGGCAAATTTAG300.12830382345393893No Hit
GTGCCGATGGTGGTTCGCACCAGCGTGCCCAACGTCACCGTTCCACGCGC300.12830382345393893No Hit
GTATACGACGGTCGGCAACGCGGCGAGTGGCACGGGCAATGTGGCTGCTG290.12402702933880763No Hit
AACTAATAGAGCCGCCAATCCACCTGTACCACCGATTTTCATCCTGCGGT280.11975023522367632No Hit
GTCCCAGGTTGTTCAAAAGGTAGTCGCTACTGAGCCACTGGCGATAGTTG270.11547344110854503No Hit
CCTGTAGCCTGTCAGCTGGGCAACCTGTTCACGGATGAGCTTTTGCTCGT270.11547344110854503No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT270.11547344110854503No Hit
TCTTTACATAGGTCTTCAAGAAGCGCGATCATAGAAATTATCCACCACAA260.11119664699341375No Hit
AGCATGGACAGCGTGGCACCGCCCAGCACCCACTCGCGCGCCCTGCTGTG260.11119664699341375No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG260.11119664699341375No Hit
CTTCTACTCCGGGCGTGATCCGAAGAAGAACATCGATGGAGTGACCCGTT250.10691985287828243No Hit
GTTCTAATGCTGCGAAAATCCTGGTTTTATTTACGCAGAAAAAAGAAGGC250.10691985287828243No Hit
ATCCACCACAATGCAGCCGATGCGGTGCTCAAGCGCCATCCGCAGTTCTT250.10691985287828243No Hit
GTTCTTACACGGCACAAGCAGACAAAATCAACATGGTCATTTAGAAATCG250.10691985287828243No Hit
TCCGTGAACAGGTTGCCCAGCTGACAGGCTACAGGTATCTCGATGGCTAC240.10264305876315115No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT240.10264305876315115No Hit
GTTCACGGATGAGCTTTTGCTCGTAGAAGCCGTCACCCAGCCGCTTGAGG240.10264305876315115No Hit
CCTCTTTACGTATATGATGTGGCTTTAATACGTGAGCGTGCTAAAAGCTT240.10264305876315115No Hit
GTACATGGGTGAGCAGTACGGCATCGATGCTCGCGGGATCGACCGGCAGC240.10264305876315115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)