FastQCFastQC Report
Tue 10 May 2022
EGAF00003647458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23382
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1270.5431528526216748No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1050.44906338208878627No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT600.25660764690787785No Hit
TCTTTACATAGGTCTTCAAGAAGCGCGATCATAGAAATTATCCACCACAA410.17534855872038319No Hit
GTAATGTAGTCATGCGTATGCGCTTCTACTCCGGGCGTGATCCGAAGAAG360.15396458814472672No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT330.1411342057993328No Hit
GTATTAGTACGGAAGCTCTCGGAAAAACCATCCCGGGGGCCACGGATCAC320.1368574116842015No Hit
GTCCCAGGTTGTTCAAAAGGTAGTCGCTACTGAGCCACTGGCGATAGTTG300.12830382345393893No Hit
GTACATGGGAATGCCGCAAAAGATTCTCGAAAAATCGGCGGCAAATTTAG290.12402702933880763No Hit
GTCCCGGACCGCGTCGCGCAATCGGCGGCTGGCGGCTCCTGCTGCCGCTT280.11975023522367632No Hit
GTATACGACGGTCGGCAACGCGGCGAGTGGCACGGGCAATGTGGCTGCTG280.11975023522367632No Hit
TCCCAATACAGTACAGATTTCTTCCCCAAAACGAAATGAGCAAGGAAAAA280.11975023522367632No Hit
CCTTAATATATTCGCTGGTTTAACTGACGAAGCTCAACATGCTGAAATCA280.11975023522367632No Hit
ATGTAAAGAAACGGGTCACTCCATCGATGTTCTTCTTCGGATCACGCCCG270.11547344110854503No Hit
CCTGTAGCCTGTCAGCTGGGCAACCTGTTCACGGATGAGCTTTTGCTCGT270.11547344110854503No Hit
GTCGTATACCGACTGCAGCCGCTTCTTCATCGCATCGCCGCGCAGCCGCT260.11119664699341375No Hit
CGTCGGCACTGAGCAAGGCCCCGTTGCCGTTGATGTCCCCAGGACGCACG260.11119664699341375No Hit
GTTCTTACACGGCACAAGCAGACAAAATCAACATGGTCATTTAGAAATCG260.11119664699341375No Hit
AACTAATAGAGCCGCCAATCCACCTGTACCACCGATTTTCATCCTGCGGT250.10691985287828243No Hit
GTGGTAAGTGAGGGCATTTGCCCAGAATTTCTCAAAAAATTACCTCAGTT250.10691985287828243No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT240.10264305876315115No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC240.10264305876315115No Hit
ATGTACGGCTGTTGCAGCAGGCTTTCCGGCAGAACGCATCCACTTTCATG240.10264305876315115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)