FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003647562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29
Sequences flagged as poor quality0
Sequence length146
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGAACAGAGATGAGCGGCAGACGGAAATCGGCTCATATCGTTTCCGAT26.896551724137931No Hit
GCCTGTATCGATGACTGCTTTAAAGCGATCTTGATCCCGCTTTGTGATCG26.896551724137931No Hit
CTTCAGCTAACCTTTTTGCCCGTTCCTGCAATTTTGAAATTGGCGTAAAA26.896551724137931No Hit
GGCCACGGCATCGCGCTGCTGTCCGAAAGCATCGCGCGCGCTGCGCTGTC26.896551724137931No Hit
GCGACTCCACCCCTGGATAAAAAGTGATAAAGCGAAGAATCGACTGATCA13.4482758620689653No Hit
GTTTGGCTGGGCTTCTTATGAAACGAACTGGCGCCGCTTGATCGAGCGGG13.4482758620689653No Hit
GCGACAGTCAGCCCGTCCTGCAACAATTGTTTCGTTTGTTGAGAAAAATG13.4482758620689653No Hit
ACCCCGACACCGGCAAAGCGCAACATCTCCAAATCATTTCGTCCGTCGCC13.4482758620689653No Hit
ATCCGCACTTCCGCCGGCGTCTCGTACGTCGGGCCGCTTGTAGCCAGATA13.4482758620689653No Hit
ATTTTCGACATTTCTTCGTCCAGGCGGAACGCCGCCTCGGCAGCTCGCTG13.4482758620689653No Hit
ATACTTTCCTTCAGGCACTTCCTGCCGCCCGGCGCGATAGCATTTCATCG13.4482758620689653No Hit
AAATGAAATTGAAGGCACATTCGGTAAAGGCAAGCGCCATCGCGGACTCG13.4482758620689653No Hit
CCTCCGAGATGAGCTGTAGGAGCACTGGCCAGCCATTAAACAACAGCTGC13.4482758620689653No Hit
ATATCAATCGTTCCCGCTATGTATGCTTCCAGCCGTTTTTTCAAACGGGT13.4482758620689653No Hit
GGTTCATGGGTTGTTCTCGTGCTGCCGGGCCGGGACCCTGGAAAGTCGCC13.4482758620689653No Hit
GCATATATGGAATTTTTTTCGTTTGCGCTACACGAATTTTGTAACCTATC13.4482758620689653No Hit
GGTCCCTCAACCGGGGCACTAGTTCTGGTCGTGTTTCACCGGTCGTCGAC13.4482758620689653No Hit
TGACTGCAAAGCCCTTCTCCCAAAAGTCATCTACCGACTCCACGGTGGAA13.4482758620689653No Hit
AAAAAAAACAGGTGCAACCGTAAAGAAGGATGTGACAAAATAAGGAGGCC13.4482758620689653No Hit
CAAGAACAGAGATGAGCGGCAGACGGAAATCGGCTCATATCGTTACCGAA13.4482758620689653No Hit
TCACCACACGATTCATTTCTGAAATTGCTTTATCGTAAATTTCTTTTTTT13.4482758620689653No Hit
GTGCGCGTCTTTTCAAATACGTCCTGTCAACCATTTTTTTCACCCTTTTT13.4482758620689653No Hit
GCGACATCGCGTGGGGCGGCAACTGGTTCTTCCTGATCAGCGACCACGGG13.4482758620689653No Hit
ATCTGTTTCCGCTCTGCCTGGCGCAATGGCATGAAACCGTTTTAGCTGGC13.4482758620689653No Hit
GAAGCGGTACGCCGCCGCGGCATTCCCGGATGGGGGGTTTTTACAAATAA13.4482758620689653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)