FastQCFastQC Report
Tue 10 May 2022
EGAF00003647647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66075
Sequences flagged as poor quality0
Sequence length146
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC3110.4706772606886114No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1860.2814982973893303No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA1500.22701475595913734No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT1430.2164207340143776No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA1410.2133938706015891No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1290.1952326901248581No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1240.18766553159288688No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA1230.18615209988649262No Hit
CTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCG1060.1604237608777904No Hit
ATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGGCCGAT1060.1604237608777904No Hit
AGGCTACTACGTGCGCGATATGACAAGTTAACAAGACGGCGCAGGTTGAT1030.15588346575860765No Hit
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATT1020.1543700340522134No Hit
GTGTACGGCCGCGTCGCGAGCGCCCTCCAGCGCCGGGGCTCGGCGTCGTA1010.15285660234581913No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT980.14831630722663638No Hit
GCCCATGGAGGCGCTCCGGTGGATGGGGGTCCCGCACACGCTGCCGGCGA940.1422625804010594No Hit
GTAATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGGCC890.13469542186908817No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT840.1271282633371169No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC840.1271282633371169No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG830.12561483163072265No Hit
CTCTACTCCCTGCCCACGATCTCCCCTCGAGTATACAAGCTTGTCGCGCT790.11956110480514567No Hit
CTCTTATACACAGCAGGTAGATGGTGATTGTGATTACCTTGACCCTTGTT740.11199394627317444No Hit
GAGTAATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGG670.10139992432841467No Hit
ATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTG670.10139992432841467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)