FastQCFastQC Report
Tue 10 May 2022
EGAF00003647649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44016
Sequences flagged as poor quality0
Sequence length146
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA3120.7088331515812432No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT2170.49300254452926207No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC1020.23173391494002182No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA910.20674300254452924No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT830.1885677935296256No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT680.15448927662668122No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT680.15448927662668122No Hit
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA650.14767357324609234No Hit
TCTTAATAGTCTTGTCTCTGGATCCAGACAGCAAGAATGGCCCAGGTTTA640.14540167211922936No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT600.13631406761177753No Hit
TCTCTATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCTGC590.13404216648491457No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC580.1317702653580516No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA570.12949836423118866No Hit
GTTCTAGCCCCCCACACCCTTGATCCGCCCCGCAGGCAGGTACTTCCCGG550.12495456197746274No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC550.12495456197746274No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA540.12268266085059978No Hit
GTATCGGCTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCAT490.11132315521628498No Hit
CTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGG490.11132315521628498No Hit
TGACCAGACTGTGCGTGTATGGGTCGTAGCAACAAAGGAATGCAAGGCTG480.10905125408942204No Hit
TCCTGTAACAACGCATCTCATATTTGGAATGACTATTAAAAAAACAACAA480.10905125408942204No Hit
GTACATGGGAGCAATTGAAGTGAAGATGATTGACCGCACGCAATTGATAT480.10905125408942204No Hit
GTACATGGGGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAG470.10677935296255905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)