FastQCFastQC Report
Tue 10 May 2022
EGAF00003647652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43668
Sequences flagged as poor quality0
Sequence length146
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA2660.6091417055967756No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT2240.5129614362920216No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC1030.23587066043784924No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA830.19007053219749015No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT760.17404048731336447No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT750.17175048090134654No Hit
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA680.15572043601722085No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA630.1442704039571311No Hit
TCTCTATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCTGC620.14198039754511313No Hit
GTTCTAGCCCCCCACACCCTTGATCCGCCCCGCAGGCAGGTACTTCCCGG580.13282037189704132No Hit
ATCTACGGCCGCAGAGCGGCTGGCAGTTTCTTCGAGGACCTCAGCAAGAC570.13053036548502336No Hit
CTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGG570.13053036548502336No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC560.1282403590730054No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT560.1282403590730054No Hit
GTATCGGCTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCAT550.12595035266098745No Hit
TCTAGGAAGTGAGTCTCCAGGAAGTCACAGAGATGGGGGTCCGTGCGGGC550.12595035266098745No Hit
CTCCGGGACCATCTTCTCGGCCATCTCCTGCTTCTGGGACCTGCCAGCAC540.12366034624896949No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT540.12366034624896949No Hit
GTACATGGGACGCAGTTCTAGCCCCCCACACCCTTGATCCGCCCCGCAGG530.12137033983695153No Hit
TCCTGTAACAACGCATCTCATATTTGGAATGACTATTAAAAAAACAACAA500.1145003206008977No Hit
ATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAAACTTCA490.11221031418887974No Hit
GAACAGATCCGGGGACTCTCTTCCAGCCTCCGACCGCCCTCCGATTTCCT480.10992030777686176No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA460.10534029495282587No Hit
CTATAAAGATGGAGCTAAATATTCTTCTAAAAATAGGATGTTTGGTTAAC460.10534029495282587No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT460.10534029495282587No Hit
ATCTTGAACATACCTGATGCGTATCATTAATGGCACATGCTGTAATTGTC450.1030502885408079No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC440.10076028212878997No Hit
GCCTATACGGTGCCCTCGCTCTTGGGTCCGCGCGTCATCGGCAAAGTCTC440.10076028212878997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)