FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003647716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4430
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAG100.2257336343115124No Hit
ATACAGGACTCGGCTCCGGGGGCAGGGCGAGGAATGGAAGTTGGAGTACG80.1805869074492099No Hit
GTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAGCCCCCCAACTATGA80.1805869074492099No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG80.1805869074492099No Hit
CTCCTGATCTATCCATAGGCCTGGAAGATCAGCACTGGGATGACGATGAG80.1805869074492099No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG80.1805869074492099No Hit
GGGTGGCCTCTGGCTCTGCCGTAGTTTTGCCCCTGGCCAGGATTGCTACA80.1805869074492099No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG70.1580135440180587No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT70.1580135440180587No Hit
ATCCATAGGCCTGGAAGATCAGCACTGGGATGACGATGAGCAGAATGGTC70.1580135440180587No Hit
ATTTGGGATAGTTGGCTCCTCGCTGGGTCAGGATGGCTGGGTGCCTTCTC70.1580135440180587No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.1580135440180587No Hit
GTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAG60.13544018058690743No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG60.13544018058690743No Hit
CTCACATATTTAACATAAAAAGAAATGCAGCAAATGGCTCAGTATCGTAT60.13544018058690743No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT60.13544018058690743No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA60.13544018058690743No Hit
GTCTTTACGTGGGTACTTGCGCTTACTTTGTAGCCTTCATCAGGGTTTGC60.13544018058690743No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT60.13544018058690743No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC50.1128668171557562No Hit
TAACTATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATAC50.1128668171557562No Hit
CCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTT50.1128668171557562No Hit
ATGCTGGAGTGTAATGGTGCTATATCAGCACACTGCAACCTCCGCCTCCC50.1128668171557562No Hit
GTAGAAAAGCGTGTGAGGATAAAGGGCTGATACAGGACTCGGCTCCGGGG50.1128668171557562No Hit
CTTCTGAGGATCCGGCAAGATGGCAGAAGTAGAGCAGAAGAAGAAGCGGA50.1128668171557562No Hit
CCAGAAACACGTGCACTTTATTGAATGCCATTGTAGAAAAGCGTGTGAGG50.1128668171557562No Hit
GCCTAGCAGTCGCTCCATTTATCGCTTGAGATCTCCAGCCTTACCGCGGC50.1128668171557562No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT50.1128668171557562No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC50.1128668171557562No Hit
GGATTGCTACAGTTGTGATTGGAGGAGTTGTGGCCATGGCGGCTGTGCCC50.1128668171557562No Hit
GAATCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAGCCCC50.1128668171557562No Hit
GTACATGGGTGGGCGGTGTGCCGGGCTCCTGATGACCCTCAAGGGACTTC50.1128668171557562No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG50.1128668171557562No Hit
ATATAGGGTAATGGAAATTTCCTGCCCTCTGGGTTCCCCATTTTTACTAT50.1128668171557562No Hit
CATCAGCAGTGACCAGTGTGGCCAAAGTGGTCAGGGTGGCCTCTGGCTCT50.1128668171557562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)